Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 735 / 0 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) AT1G78800 52 / 6e-07 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093000 [exp] 293 / 1e-98 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G109000 [exp] 48 / 1e-05 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028977 [exp] 766 / 0 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007500 [exp] 763 / 0 AT2G40190 745 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008976 [exp] 209 / 2e-65 AT2G40190 192 / 1e-59 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10014773 [exp] 196 / 2e-58 AT2G40190 188 / 1e-55 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008975 [exp] 176 / 1e-53 AT2G40190 186 / 4e-58 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007909 [exp] 151 / 2e-44 AT2G40190 152 / 3e-45 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007501 [exp] 114 / 7e-30 AT2G40190 103 / 2e-26 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10010207 [exp] 99 / 1e-24 AT2G40190 111 / 6e-30 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10021233 [exp] 54 / 5e-09 AT2G40190 52 / 3e-09 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10031614 [exp] 54 / 6e-09 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF15924 [poplar] [flax] ALG11_N ALG11 mannosyltransferase N-terminus
Representative CDS sequence Show only first row Show all	>Potri.012G095500.1 pacid=42783706 polypeptide=Potri.012G095500.1.p locus=Potri.012G095500 ID=Potri.012G095500.1.v4.1 annot-version=v4.1 ATGGAAAATACACTTCTCCTTGTAATTTTCTCCCTACTTACTTCTCTATTAACCTTTATCTTAACAATCACGTCCCGCGAGATAATCAATGGCAGAAGGA CCCGACAGAGGGCTGTCGGTTTCTTCCATCCATACACAAACGATGGTGGCGGTGGAGAAAGAGTGTTATGGTGTGCCGTGAAAGCAATTCAAGAAGAAAG TCCTGATCTTGACTGTGTTATTTACACAGGAGACCATGATTCCTCTTCAGAAAGCTTGATGTCTCGTGCCCTTGATCGATTTGGTGTCCAATTACTTACC CCTCCAAAGGTGGTGCATTTGTATAAAAGGAAGTGGATCGAAGAAACTAGTTATCCTCGGTTTACTATGATTGGTCAAAGCTTTGGATCAGTTTACTTAA GTTGGGAGGCTTTGTGCAAGTTTACTCCTTTGTATTATTTTGATACTAGCGGATATGCTTTCACATACCCAGTTGCTAGATTGTTTGGTTGCAAAGTTAT TTGTTACACGCATTACCCTACGATCAGTTTGGATATGATTTCTCGTGTTCGTGATCGGAGCTCCATGTACAATAACGATGCTTCAATTGCCAGGAGTGGT TGGCTATCATGGTGCAAGATCATCTACTATACACTGTTTAGTTGGATGTATGGATTTGTAGGCTCTTGTGCACACCTTGCAATGGTGAACTCTTCATGGA CCCAGTCTCATATTGAAAAGCTTTGGAGAATTCCAAGTCGTATTAAGCGAGTGTATCCTCCTTGTGACACATCAGGGCTTCAGGTGCTTCCTTTGGAAAG ACCGGCCACAACTCCGATATTTATTTCTGTGGCTCAGTTTCGTCCTGAGAAGGCCCACCCTCTTCAACTCGAGGCCTTTTCATTGGCCATCAGGAGGTTA GATGCAGACATGCCGAGACCTATACTCCAGTTTGTTGGTAGTTGCAGAAACAAATTTGATGAGGATAGGCTGCAGAAGTTGCAGGACAAAGCAGTTGAAC TGAATGTAGATGGGGATGTACAATTCTACAAGAATGTGATGTATAGGGACTTGGTGAGACTTTTGGGAGGTGCAGTAGCAGGAATGCATTCTATGGTAGA TGAACACTTCGGCATTAGTGTTGTGGAGTATATGGCTGCAGGCGCCGTGCCAATTGCTCATAATTCTGCTGGGCCAAAAATGGACATTGTTCTAGAAGAA GATGGGCAGCAAACGGGATTTCTTGCCCAGAATGTAGATGAGTATGCAGAAGCCGTCCTCAAAGTTTTAAGGATGCCAGAAACTGAGAGACTCAAGATCG CTGCAGCTGCGAGGAAACGTGCAGGCAGATTTTCTGAGCAAAGATTTTATGAAGATTTAAAAGCTGCAATTCAACCCATATTAAACCATGTTTCCAGATG A
AA sequence Show only first row Show all	>Potri.012G095500.1 pacid=42783706 polypeptide=Potri.012G095500.1.p locus=Potri.012G095500 ID=Potri.012G095500.1.v4.1 annot-version=v4.1 MENTLLLVIFSLLTSLLTFILTITSREIINGRRTRQRAVGFFHPYTNDGGGGERVLWCAVKAIQEESPDLDCVIYTGDHDSSSESLMSRALDRFGVQLLT PPKVVHLYKRKWIEETSYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPVARLFGCKVICYTHYPTISLDMISRVRDRSSMYNNDASIARSG WLSWCKIIYYTLFSWMYGFVGSCAHLAMVNSSWTQSHIEKLWRIPSRIKRVYPPCDTSGLQVLPLERPATTPIFISVAQFRPEKAHPLQLEAFSLAIRRL DADMPRPILQFVGSCRNKFDEDRLQKLQDKAVELNVDGDVQFYKNVMYRDLVRLLGGAVAGMHSMVDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLEE DGQQTGFLAQNVDEYAEAVLKVLRMPETERLKIAAAARKRAGRFSEQRFYEDLKAAIQPILNHVSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Potri.012G095500 [exp]	0	1
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	15.00	0.7051
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	27.20	0.6611
AT5G52545			unknown protein		Potri.004G079400 [exp]	38.61	0.7045
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Potri.014G004900 [exp]	42.42	0.6900	SMH906
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	42.96	0.6790
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	51.65	0.6530	AGO902
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	59.39	0.6607
AT5G37550			unknown protein		Potri.017G131300 [exp]	60.33	0.6112
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	60.39	0.6639
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G017000 [exp]	64.74	0.6687

Compare expression of checked genes

Potri.012G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.