Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 719 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 535 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 450 / 5e-147 Leucine-rich repeat protein kinase family protein (.1.2) AT1G14390 340 / 1e-105 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 311 / 7e-95 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 209 / 2e-56 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 195 / 1e-51 BRL3 BRI1-like 3 (.1) AT1G55610 189 / 1e-49 BRL1 BRI1 like (.1.2) AT4G20140 187 / 5e-49 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G28680 185 / 1e-48 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093100 [exp] 1208 / 0 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 824 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 466 / 1e-153 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 424 / 4e-137 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 388 / 8e-124 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 361 / 1e-113 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 219 / 1e-59 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 212 / 3e-57 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 198 / 1e-52 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 753 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 734 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 725 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 688 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029659 [exp] 500 / 8e-169 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 496 / 2e-167 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 414 / 1e-133 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 399 / 1e-127 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 398 / 2e-127 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 396 / 1e-126 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G095600.5 pacid=42784299 polypeptide=Potri.012G095600.5.p locus=Potri.012G095600 ID=Potri.012G095600.5.v4.1 annot-version=v4.1 ATGGGGTACTGTAGCTTGTTTCTTCTGTTATGTTTCCCGTGGAGTTTTCTCATTACTGGTACTCATCAATTACAATCCTCACAAACACAAGTGCTTCTTC AGCTAAGGAAGCATTTAGAGTACCCAGCTCAACTAGAATTTTGGAATAATCATGGAATGGATTTATGCTATTTATCTCCATCCACACAATTAAATATGAC ATGCCAGGACAATGTTGTCACTGAGCTTAGAATGACGGGAGACAAGCCGGTCAAGGTCAATAGCTTTGTGGGATTTGCAATTACTAATAAAACTTTATCA GGGAACTTCTCTATGGACTCTTTTGTGATCACTCTTGCAAGGTTGACCAGCTTGAGAGTTCTTAGTCTTGTTTCTTTGGGCATTTGGGGTCCACTTCCAG ACAAAATTCATAGGTTGTCTTCGCTTGAATATTTGGATTTGAGTTCAAATTATCTCTTCGGTTCCGTTCCTCCAAAGATTTCTACAATGGTGAAACTTCA AACTCTTAAACTGGATGACAATTTCTTCAATGATACAGTCCCTGCTTGGTTTGATTCGTTGTCTAACCTGACAATTCTAAGCTTAAGGAACAACCAGTTG AAAGGTCCATTTCCATCTTCAATACAGCGAGTAACCACTCTCACTGATCTTATTTTGTCTGGCAATGATATATCCGGGAAGTTACCAAATCTTGACATGT TAAGTAAACTGAATATGCTAGATTTGAGCGAAAACAGTTTAGATTCTGATCTACCTTCAATGCCCAAAGGGTTGGTCATGGCTTTCCTTAGCAACAACTC CTTGTCAGGTGAGATCCCAAGGCAATATAGCCAGCTAAGTCAGCTTCAGCATTTTGATATGTCATTCAATGAACTAAGTGGAAAAATTACTGCTTCCCTT CTCTCATTGCCCAGCATTAGCTACTTGAATTTGGCATCAAATATGTTGAGCGGTTCACTCCCAGACCGTCTGACCTGTGGCAGCAAACTTCAGTTTGTTG ATGTATCTAATAACAGGTTAACTGGTGGATTGCCTTATTGTTTTACTGAATCAGGATATAGAGTGGTAAAGTTTGGTGGAAATTGCTTATCTGTTGATTT ACATCATCAGCATGCAAAATCATCTTGTATAGATGTTCCTGTGAAAAGGAAACATTCTGGAGGCAAAAACATGGGAGTACTAGTTGGTGTGCTTGCTGGC ATATTTTTCTTCATAGTTCTCTTGGCTTTTGGCCTTGTCATGGTGCGCAAAAGATATTTCTCTCGAGGGATACCGGAGCAGCATTTGTTGCACAAAGCAG AGCAGGATAAATCAGTGGCAGGATTCTCCTCTGAGATCTTCTCTAGTGCAAGGTTTGTTTCCGAAGCTGCAAAATTGGGTATACAAGGTCTCCCAGCATG CCGGTCATTTACACTAGAAGAGTTAAAGGAAGCAACAAACAACTTTAATAACTCTTCCATTTTGGGCGATGGTTCTTACGGGAAGCTTTACAAAGGAATA TTAGAGAATGGAACCCAGGTTGCTATAAGGTGCGTACCTTCATCAAAGAAATATTCAATGCGAAATCTTAAACTCAGGATGGATTTGCTTGCAAAGCTTC GCCACCCGCACCTGGTTTGCCTTTTAGGGCACTGCATTGATGGTGGGGGACAAGATGATTACAGAGTGAACAAAGTCTTCCTCGTATACGAATATGTTTC TAACGGCAACTTCAGAGCTTACCTCTCTGAGGACAGTCCTGGAAAGGTTCTAAACTGGTCAGAGAGATTGGCAGTGCTAATTAGTGTCGCAAAGGCTATT CACTTTTTGCATACTGGAGTTATTCCTGGTTTCTTTAACAATCGATTGAAAGCAAATAATATACTGCTCAATGAACATGGGATAGCAAAGTTGAGTGACT ATGGGCTTTCCATCATCTCTGAAGCAGCTGGAAATTGTGGGGAAAATGGGGAAGAGCCTAAATCATGGCAAATGTCAAGATTAGAGGACGATGTTTGTAG CTTTGGATTCATATTACTTGAATCACTCGTTGGACCTTCAGTATCTTCCAGAAGAGACAAGCTTGCACTAGATGAATTGGCATCTTGTAACAGCCAAGAG GGACGTCAAAAACCATTAAACCCTATTGTTCTGGCCACAAGCTCACAAGAATCTTTATCAGTTGTGATTACGATAACCAACAAATGCATTTGTTCTGAAT CATGGAGTCGACCATCATTTGAGGACATTCTTTGGAACTTGCAGTATGCAGTTCAGGTCCAGGCAACAGCAGACGGTGAACAGTTTCGATGA
AA sequence Show only first row Show all	>Potri.012G095600.5 pacid=42784299 polypeptide=Potri.012G095600.5.p locus=Potri.012G095600 ID=Potri.012G095600.5.v4.1 annot-version=v4.1 MGYCSLFLLLCFPWSFLITGTHQLQSSQTQVLLQLRKHLEYPAQLEFWNNHGMDLCYLSPSTQLNMTCQDNVVTELRMTGDKPVKVNSFVGFAITNKTLS GNFSMDSFVITLARLTSLRVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNYLFGSVPPKISTMVKLQTLKLDDNFFNDTVPAWFDSLSNLTILSLRNNQL KGPFPSSIQRVTTLTDLILSGNDISGKLPNLDMLSKLNMLDLSENSLDSDLPSMPKGLVMAFLSNNSLSGEIPRQYSQLSQLQHFDMSFNELSGKITASL LSLPSISYLNLASNMLSGSLPDRLTCGSKLQFVDVSNNRLTGGLPYCFTESGYRVVKFGGNCLSVDLHHQHAKSSCIDVPVKRKHSGGKNMGVLVGVLAG IFFFIVLLAFGLVMVRKRYFSRGIPEQHLLHKAEQDKSVAGFSSEIFSSARFVSEAAKLGIQGLPACRSFTLEELKEATNNFNNSSILGDGSYGKLYKGI LENGTQVAIRCVPSSKKYSMRNLKLRMDLLAKLRHPHLVCLLGHCIDGGGQDDYRVNKVFLVYEYVSNGNFRAYLSEDSPGKVLNWSERLAVLISVAKAI HFLHTGVIPGFFNNRLKANNILLNEHGIAKLSDYGLSIISEAAGNCGENGEEPKSWQMSRLEDDVCSFGFILLESLVGPSVSSRRDKLALDELASCNSQE GRQKPLNPIVLATSSQESLSVVITITNKCICSESWSRPSFEDILWNLQYAVQVQATADGEQFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14210			Leucine-rich repeat protein ki...		Potri.012G095600 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	7.34	0.7889
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	14.14	0.7718
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	27.05	0.7853
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112600 [exp]	30.33	0.7661
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.016G092600 [exp]	33.67	0.7688
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.008G118300 [exp]	34.14	0.7159	PAN.2
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	37.74	0.7516
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Potri.008G166632 [exp]	42.35	0.7266
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003500 [exp]	42.42	0.7250
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G071100 [exp]	46.54	0.7426

Compare expression of checked genes

Potri.012G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.