Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63420 1301 / 0 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT2G38250 63 / 2e-10 Trihelix Homeodomain-like superfamily protein (.1) AT1G76880 56 / 8e-08 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G13450 55 / 1e-07 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT1G33240 54 / 3e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G76890 54 / 4e-07 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT3G25990 53 / 6e-07 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 52 / 1e-06 Trihelix Homeodomain-like superfamily protein (.1) AT2G01730 52 / 3e-06 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT5G03680 48 / 2e-05 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093600 [exp] 1588 / 0 AT5G63420 1230 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.010G055000 [exp] 62 / 6e-10 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.008G179700 [exp] 61 / 2e-09 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.019G010200 [exp] 61 / 2e-09 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 60 / 8e-09 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.001G454500 [exp] 59 / 2e-08 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.010G106200 [exp] 58 / 2e-08 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.001G129900 [exp] 56 / 3e-08 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.005G192000 [exp] 57 / 5e-08 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016758 [exp] 1282 / 0 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10022454 [exp] 1280 / 0 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10036978 [exp] 63 / 4e-10 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10015824 [exp] 62 / 9e-10 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10018887 [exp] 59 / 2e-08 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10020873 [exp] 57 / 4e-08 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 56 / 1e-07 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10004806 [exp] 53 / 5e-07 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10018888 [exp] 53 / 9e-07 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 53 / 9e-07 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily CL0398 [poplar] [flax] RMMBL_DRMBL PF07521 [poplar] [flax] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G095800.1 pacid=42783195 polypeptide=Potri.012G095800.1.p locus=Potri.012G095800 ID=Potri.012G095800.1.v4.1 annot-version=v4.1 ATGCAGTTAGGGCTTTTGGGAGGTTTTTCTCTCTACTGCACGTCTTCCCGTAAACCTCTCAAAACAACATCACCAAACATGGCTGCCGCTTTCAGTGCAC TCTCCTCCTGTCCGTACACTTTCTTCTGCCGCCCTAGCTCTACCAAGCTTTGCGTTTCCTGCTCTGCTGGCTCCCCTACTACAACTACTATAGGCAGTAG AGGAACGAAAGCTCCGCCGCGTAAAAGGACGGGAAGAAAGGAAGGGACAGGGAAAAGTATGGAAGATTCGGTTAAAAGAAAGATGGAGCAGTTTTATGAA GGGCCTGATGGTCCGCCGCTGCGTATAGTTCCAATTGGTGGTTTGGGTGAGATTGGGATGAATTGTATGCTTGTTGGGAATTATGATCGATATATTTTAA TTGATGCCGGTGTTATGTTTCCTGATTATGATGAGCTTGGAGTTCAAAAGATTATACCTGATACCACATTTATCAGAAGATGGAAACACAAAATTGAAGC AGTTATTATAACACATGGTCATGAGGATCACATTGGTGCGTTGCCTTGGGTTGTTCCAGCTTTGGATCATAACACTCCAATTTATGCATCATCCTTCACG ATGGAGCTCATCAAGAAACGTTTGAAGGAGAATGGGATCTTTGTTCCATCTAGACTTAAGGTGTTTAAAACAAAGAGGAAATTCACAGCTGGGCCTTTTG AAATAGAGCCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGATTGGTCCTTCGCTGTGCTGATGGTACAATCCTTCACACTGGGGACTGGAAGAT TGATGAATCACCATTGGATGGAAAAGTTTTTGATCGTGAAACTTTAGAGGAACTCTCCAAAGAAGGAGTTACATTGATGATGAGTGACTCAACAAATGTA CTGTCACCTGGAAGGACAATTAGTGAGAGTGTGGTAGCTGATGCATTATTGAGACGTATTTCAGCTGCTAAAGGAAGGATTATCACTACTCAATTTGCAT CAAATATACACCGCCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACTGGTAGAAAGTTGGTCTTTGTTGGCATGTCATTGAGGACATATTTGGATGCAGC ATGGAAGGATGGAAAGGCACCAATTGATCCGTCCACTCTAGTTAAAGTGGAAGATATTGATTCTTATGCCCCTAAGGATCTGCTAATTGTCACAACTGGA TCACAAGCAGAGCCGCGTGCAGCTCTCAATCTTGCATCATATGGAAGTAGTCATGCCTTCAAACTGAACGAGGAAGATGTTATTCTTTATTCAGCTAAGG TAATCCCTGGTAACGAATCTAGGGTAATGAAAATGATGAACCGCATATCAGAGATTGGGTCAACTATTGTAATGGGTAAAAATGAGCTGCTTCACACGTC TGGCCATGGGTATCGCGGAGAACTGGAAGAAGTGCTTAAAATTGTGAAGCCGCAACATTTTCTTCCCATACACGGAGAACTTCTGTTTTTGAAAGAACAT GAATTGCTTGGGAAATCAACTGGCATTCAACACACTACTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCTCACTTGAGGAACAGAAGAGTTCTATCCA ATGGTTTTGTCTCCCTTGGGAAGGAAAATTTGCAGTTGATGTATAACGATGGGGATAAAGCTTTTGGCACATCAACTGAGCTTTGCATTGATGAGAGACT AAAAATTGCATCAGATGGTATTGTAGTGGTCAGCATGGAAATTTTACGCCCTCAAAATCTAGATGGTCAAGTTGAAAAAAGCTTAAAAGGAAAAATAAAA ATCACAACACGCTGTCTGTGGCTTGACAAAGGGAAGCTTTTAGATGCACTCCACAAAGCTGCTCATGCTGCACTTTCAAGCTGTCCGGTGAACTGTCCTT TAACTCACATGGAAAGAACAGTGTCTGAGATGTTGAGGAAGATGGTAAGGAAGTATAGCGGTAAAAGGCCTGAAGTCATTGCCATTGCTGTGGAAAACCC AGCAGCAGTTCTTTCTGATGAACTCAATGCAAGGTTATCTGGCAATTCTCATGTTGGCTTTGGGATATCGGCATTGAGAAAAATTGTCGATGGGCATCCA AAAGGAAATCAGGTGGACAGGAAGCAACCTGATGGAAATGGTTATGCACATTTAGAGAAAACATCACCTCAAAATCTGGAAGTTGATGGTATTGAATTTG AAAGAGAGCTACCTAAGGAAGAGGGCACTTCTTCAAGTCCTAACTTAGCTGAAGGACATTCCTCCGCCTCTGAGGATCAAGATGATTTCCAGAAATCATC CGTTCCTTCATCCTCCCCAGTCAATGAATTAGTAAAAAGTGATGAAAGTTTGGTTCCACCAGGGGAACAGATGAATAAGCTCAAGGAAGATGTTATGGAC AGTAGTGATGATGACTTGTTGGAAAATGAAAATTCTAGACTGAAGCGTTCCAAATCTGTTAAACGGAACAAATGGAAACCTGAGGAGGTTAAGAGTCTTA TAAAAATGCGTGGGGAATTACATAGTAGATTTCAAGTTGTAAGAGGTAGAATGGCTCTGTGGGAAGAGATATCTACTAACTTAATGGCTGATGGGATCAA TCGCAGTCCAGGACAGTGCAAATCTTTATGGACATCTCTGGTTCAGAAATATGAGGAAAGCAAGAACGGGAAGAAAGGGAAAAAAGCTTGGCCCTATTTT GAAGACATGGATAATATTTTATCTGATTCCGAGACAATGGCAACAAAATGA
AA sequence Show only first row Show all	>Potri.012G095800.1 pacid=42783195 polypeptide=Potri.012G095800.1.p locus=Potri.012G095800 ID=Potri.012G095800.1.v4.1 annot-version=v4.1 MQLGLLGGFSLYCTSSRKPLKTTSPNMAAAFSALSSCPYTFFCRPSSTKLCVSCSAGSPTTTTIGSRGTKAPPRKRTGRKEGTGKSMEDSVKRKMEQFYE GPDGPPLRIVPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRRWKHKIEAVIITHGHEDHIGALPWVVPALDHNTPIYASSFT MELIKKRLKENGIFVPSRLKVFKTKRKFTAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNV LSPGRTISESVVADALLRRISAAKGRIITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDSYAPKDLLIVTTG SQAEPRAALNLASYGSSHAFKLNEEDVILYSAKVIPGNESRVMKMMNRISEIGSTIVMGKNELLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEH ELLGKSTGIQHTTVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLMYNDGDKAFGTSTELCIDERLKIASDGIVVVSMEILRPQNLDGQVEKSLKGKIK ITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLTHMERTVSEMLRKMVRKYSGKRPEVIAIAVENPAAVLSDELNARLSGNSHVGFGISALRKIVDGHP KGNQVDRKQPDGNGYAHLEKTSPQNLEVDGIEFERELPKEEGTSSSPNLAEGHSSASEDQDDFQKSSVPSSSPVNELVKSDESLVPPGEQMNKLKEDVMD SSDDDLLENENSRLKRSKSVKRNKWKPEEVKSLIKMRGELHSRFQVVRGRMALWEEISTNLMADGINRSPGQCKSLWTSLVQKYEESKNGKKGKKAWPYF EDMDNILSDSETMATK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	0	1
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	1.00	0.9771
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	2.44	0.9665
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	3.46	0.9718
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	3.46	0.9559
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.017G057800 [exp]	4.00	0.9531
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	4.69	0.9573
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	7.48	0.9616
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	7.48	0.9627
AT3G14470			NB-ARC domain-containing disea...		Potri.017G145000 [exp]	7.74	0.9503
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	8.12	0.9276

Compare expression of checked genes

Potri.012G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.