Plant FIBer expression Database

Potri.012G095900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G093700
[exp]
80 / 1e-20 AT1G24520 / homolog of Brassica campestris pollen protein 1 (.1)
Potri.008G182400
[exp]
58 / 4e-12 AT1G24520 / homolog of Brassica campestris pollen protein 1 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G095900.1 pacid=42782784 polypeptide=Potri.012G095900.1.p locus=Potri.012G095900 ID=Potri.012G095900.1.v4.1 annot-version=v4.1
ATGGCACACAAACTCATTGTTCTTGCTCTTGTCTTCGTTGCCATTTTTGGGTTGGCTGCAGCCGCAGCACCTGCTCCTTCCACAACTTACCTGCCTGCAG
CCGCAGCACCTGCTCCTTCCACAACTGACCTGCCTGCAGGTGAGGCGCCTTTAAGCCATGATTTTATCGGTACTAATGACGGTGATGCGGCTGGTGCACC
TTCTGCTGATGGTAGCACTGTTGTTCCAGGACCGATGGGTAGTACTACATTGGCTGGGGGTCCTGCTTCTGAAAAAGATGGTGCCGCTACCCTCAAGTTC
TCTGCCATTGTTGGAGCTGCCGCTGTCGCTGGCTACTTCTTCTTCTAA
AA sequence
>Potri.012G095900.1 pacid=42782784 polypeptide=Potri.012G095900.1.p locus=Potri.012G095900 ID=Potri.012G095900.1.v4.1 annot-version=v4.1
MAHKLIVLALVFVAIFGLAAAAAPAPSTTYLPAAAAPAPSTTDLPAGEAPLSHDFIGTNDGDAAGAPSADGSTVVPGPMGSTTLAGGPASEKDGAATLKF
SAIVGAAAVAGYFFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24520 BCP1 homolog of Brassica campestris... Potri.012G095900
[exp]
0 1
AT1G24520 BCP1 homolog of Brassica campestris... Potri.008G182400
[exp]
3.16 0.7609
AT3G58970 MRS2-4, MGT6 magnesium transporter 6 (.1) Potri.018G151800
[exp]
10.19 0.6558
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motif... Potri.006G048300
[exp]
19.59 0.7148
AT1G49800 unknown protein Potri.009G095600
[exp]
27.98 0.7093
AT5G53460 GLT1 NADH-dependent glutamate synth... Potri.015G017601
[exp]
40.09 0.6915
AT3G63380 ATPase E1-E2 type family prote... Potri.013G038400
[exp]
57.00 0.6341
AT2G16910 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic hel... Potri.009G136300
[exp]
79.45 0.6137
AT5G21170 AKINBETA1 5'-AMP-activated protein kinas... Potri.009G021600
[exp]
182.64 0.6055

Potri.012G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.