Plant FIBer expression Database

Potri.012G096050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27210 42 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G332500
[exp]
54 / 1e-07 AT3G01860 96 / 3e-24 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041572
[exp]
52 / 7e-07 AT3G01860 77 / 1e-16 unknown protein
Lus10034680
[exp]
50 / 2e-06 AT3G27210 42 / 1e-04 unknown protein
Lus10035217
[exp]
43 / 0.0003 AT3G27210 79 / 3e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G096050.1 pacid=42784372 polypeptide=Potri.012G096050.1.p locus=Potri.012G096050 ID=Potri.012G096050.1.v4.1 annot-version=v4.1
ATGCCATCTTCAAAGGAAAGTCCTGCGGATGCAGATAATCGTACCAATAGCTGGCTGGATTCCAACCAGTCTTTCATGGTGCCACCAGTGGTAAACTCGA
AAGACATCAGCGTTTCAGTCAAGGAAACACTAAATTCATCTATGACTATGAGCAACGAAACACACAACATTTCTTTTCCATCTTTTTCTGAGGAAATTCC
TGTCATTGCAGGTAATACAATTTCCAAAAGCAGTTTGGATTCTGATCAGTCTACCACAGCTATGCCTGTGACAAATTCACAGTACACTGGTGTTTCAGTC
AATGAAACATTGAATTCAGCTATGACAAATGAAATAGACAACGTTTCTATGCTATCTTTTTCTCAGGAAACTCCTGCCAAATCAGATAAGCCTGCCATAA
ACAGCTTGGATCCTGATCTGTCTTCCATGGATCCGCTAGTGACCAATTCCCAAAACACCGATTCAATTAATGAAACACTGAATTCATCTTCAAGTGTTGA
AAAGGACAAGGTTTGTATGCTGTCTCCGTCTAGGGGAAGTCCTGTCATTACAGATAATCCCATCGACAAAAACAGTTCGGAGTCTGATCAGTCTTTGTTG
GCACCACCTTCAGCAGATTCCCAATACATCATTTTTTCCGTCAAGGAAGCGTGGAATTCAGCCATGACTGATGGAACGGCCAGAGCATCTATGCCTTCTT
CTTCTGATGAAAGTCTGGTCATTACAGATGATCAATTGATTGAAAAGAGCTTGGATTCTGATCTGTCTTCCATGGAGCCGCTAGTGACCAATTCTCAGGT
CACCAGTGTTTCAATCAAAGAAACTAGGGGTTCAACTTCGAGTAATGAAAAGGACAAGGTTTGTATGCCATCTTCTTCGGGAAGTCCTGTCAGTACAGAT
AATCCTATCGACGAGAATAGTTCAGGGTCTGATCAGTCTATGTTAGCATCACCTTCAACAAATTCCCAATACATCATTTTTTCAGTTGATGAATCGCAGA
ATTCAGCCATGGGTGATGGAATGGCCAAGGTGTCTATGCCGTCTTCTTTTGAGGCAAGTTTGGTCATTGCAGATGATCGTTTGGTTGAAAACAGCTTGGA
TTCTGATCAGACGTCTACGGAGCCGCTAGTGACAAATTCTCAAGTCACCAGTGTTCCAATCAATGAAACACCGAGTGCAGCTTCAAGTAATGAAAAGGAA
AAGGTTTGTATGCCATCTTCTTCAGGAGGTCCTGTCGATACAGATAATCCTATCACCGAGAACAGTTCAGAGTCTGATCAGTCTTTGTTAGCACCACCAC
CTTCAACAAATTCCCAAGACATCAGTGTTTCGGTCAATGAAACACCAAATTCAGCCATGAGTAATGGAACAACCAAACTATCCATGCCATCTTCTGAGGA
AAGTCTAGTCACTGCAGATGATCGATTGGTTGAAAACAGCTTGGATTCTGATCAGTTTTTCATGGTGCTTCCCGAGAGGAAGTCCCAAGACATCGGTATT
TCAGTCAGCGAAACATCAAACTCATCAAGTAATGAAACAGACAAGGTTTCTAATCCATCTTATTCCACGGAAAGTCCTGTCGTTGCAGATAATCCAATTG
GAAAAAACAGTTTGGATTCTGATCAGTCTTTAACTGCACCACCGGTGACAAAATCCCAAGATACAGTTAGGGAAGAGAACTTCTATGATTGTCAAGCCTG
GCTAGGATCAGACTCTGATGATGATTTCTTCAGTGTCAGAAACGACTATAGCAATGCTTCGAGCCGCCAAAGCAGCATGAAGGGGTCACCCCAACCTGAC
GAAATAAGCGATTCCAAACGGGAGCCAAATCCAACAAAGGGAGGGAAGAAACTTGTTGATCTCATCTATGATCGTAATAGCATGCCAGCTGCCATCCAGG
AACAGAGGGAGTCCAAACAAGAAGCTTCTCCAAAAGATGAAAACAAGAGACTTTCTGAGCTCTTACAAGATCCATCGTGGAGTGACCACGCCAGTGATCA
AAAAAGCAGCACACCTGTCTTGAAGAAGACAAAACTTGTTGAGTTCTTTCAGGATAGCCACTGGAGTCAAGAAATTGCATCCACTCGTGCAACACGTTTT
CCTAGTACTAAAGGTGATGGCAAACTGAGGGCAGACGTGGAGGCCAAGCATTTATCTCCAAGGGATGGAACTTCAACTGTGACTACTCCCCGCAGTAGAG
CTAGATACGTTGGTGGCAATCTTAAGCGGGAAAATACAGCGAGAGCTACTTACTGCTGCTTTCCAAGTTGGAGCCCAATCCGTGGCTCCCAAGGAGAAGA
AAAGGCAAACCCCTCCTAG
AA sequence
>Potri.012G096050.1 pacid=42784372 polypeptide=Potri.012G096050.1.p locus=Potri.012G096050 ID=Potri.012G096050.1.v4.1 annot-version=v4.1
MPSSKESPADADNRTNSWLDSNQSFMVPPVVNSKDISVSVKETLNSSMTMSNETHNISFPSFSEEIPVIAGNTISKSSLDSDQSTTAMPVTNSQYTGVSV
NETLNSAMTNEIDNVSMLSFSQETPAKSDKPAINSLDPDLSSMDPLVTNSQNTDSINETLNSSSSVEKDKVCMLSPSRGSPVITDNPIDKNSSESDQSLL
APPSADSQYIIFSVKEAWNSAMTDGTARASMPSSSDESLVITDDQLIEKSLDSDLSSMEPLVTNSQVTSVSIKETRGSTSSNEKDKVCMPSSSGSPVSTD
NPIDENSSGSDQSMLASPSTNSQYIIFSVDESQNSAMGDGMAKVSMPSSFEASLVIADDRLVENSLDSDQTSTEPLVTNSQVTSVPINETPSAASSNEKE
KVCMPSSSGGPVDTDNPITENSSESDQSLLAPPPSTNSQDISVSVNETPNSAMSNGTTKLSMPSSEESLVTADDRLVENSLDSDQFFMVLPERKSQDIGI
SVSETSNSSSNETDKVSNPSYSTESPVVADNPIGKNSLDSDQSLTAPPVTKSQDTVREENFYDCQAWLGSDSDDDFFSVRNDYSNASSRQSSMKGSPQPD
EISDSKREPNPTKGGKKLVDLIYDRNSMPAAIQEQRESKQEASPKDENKRLSELLQDPSWSDHASDQKSSTPVLKKTKLVEFFQDSHWSQEIASTRATRF
PSTKGDGKLRADVEAKHLSPRDGTSTVTTPRSRARYVGGNLKRENTARATYCCFPSWSPIRGSQGEEKANPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G096050
[exp]
0 1
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.011G137800
[exp]
3.46 0.7883
AT4G39955 alpha/beta-Hydrolases superfam... Potri.007G094700
[exp]
3.87 0.7536
AT3G62020 GLP10 germin-like protein 10 (.1.2) Potri.010G240600
[exp]
6.92 0.7879 Pt-GER2.19
AT2G01100 unknown protein Potri.008G126800
[exp]
9.16 0.7411
AT3G04200 RmlC-like cupins superfamily p... Potri.010G240500
[exp]
15.87 0.8024
AT2G23140 RING/U-box superfamily protein... Potri.006G251000
[exp]
15.90 0.7209
AT5G19650 OFP ATOFP8, OFP8 ovate family protein 8 (.1) Potri.002G262500
[exp]
16.49 0.7633
AT4G34880 Amidase family protein (.1) Potri.009G130700
[exp]
23.64 0.7179
AT2G21300 ATP binding microtubule motor ... Potri.002G027600
[exp]
31.27 0.7413
Potri.019G017302
[exp]
56.28 0.6930

Potri.012G096050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.