Plant FIBer expression Database

Potri.012G096100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24840 1041 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G094000
[exp]
1382 / 0 AT4G24840 1018 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024203
[exp]
1139 / 0 AT4G24840 1060 / 0.0 unknown protein
Lus10009908
[exp]
1135 / 0 AT4G24840 1062 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12022 DUF3510 Domain of unknown function (DUF3510)
Representative CDS sequence
>Potri.012G096100.1 pacid=42782744 polypeptide=Potri.012G096100.1.p locus=Potri.012G096100 ID=Potri.012G096100.1.v4.1 annot-version=v4.1
ATGGCAGTGGATCCGATCCAAATACTTCCACCTCCAAGATCCGCTACCGATTTCTTCTCGGACCCGCTCGATTTCCACCCGTTATGGTTTAAACCGGACC
TTTTCCTCTCTCCGAACTTCGACTCCGACTCTTATATTTCGGAGCTCCGAACTTTTGTCCCCTTCGACACTCTCCGATCGGAACTCCAAGCACACTTAAC
TTCCCTGAATCACGAATTAATCGATTTAATCAACCGTGATTACGCAGATTTTGTTAATTTAAGTACCAAACTGGTCGATGTGGATTCTGCTGTCGTTCGG
ATGCGGGCTCCGTTATTGGAGCTCCGAGAGAAGATTGAAGGGTTTAGAGGGAGTGTGGAGTCGTCTCTTGTGGCTCTGAAGAATGGATTGGAGCAGAGAT
CGGAAGCGACGGCGACTAGAGAGGTTTTGGAGTTGTTACTGGACACGTTTCATGTCGTTTCTAAGGTTGAGAAACTAATAAAGGAGCTACCGAGTGTGCC
TGCTGATTGGTCGAATGGAGATGTGAATTTAACAGAGAAGAATGCTGCAAGCAACGGCAGCATTGAGAATGGGACAAATGTAAGAGAGACTCAAAGCATG
CTTTTGGAGAGAATTGCCAGCGAGATGAATCGACTTAAGTTCTATATTGCTCATGCACAGAACCTCCCTTTCATTCAGAACATGGAGAAGAGGATTCAAG
GTGCGAGCTTGTTGTTGGATGCAAGTTTGGGACATTGTTTTGTAGATGGACTGGAGCACCGGGATGAAAATGCAATCTATAACTGCTTACGTGCTTATGC
TGCAATTGATAATACCAGTAGTGCAGAAGAAATTTTTCGCACGACTATTGTGGCTCCTTTAATACAGAAAATTATTCCACATGGACCATCAGGAGGGGTT
GTTGGGGCATCAGGAGATGGACTTGAAATTGATTACCAAGAAATCAAGAAATGCACTGAGAAGGACTGTAAATTCCTTTTGGAGATATCTTCTGCTGAAA
ATTCAGGGTTGCATGTATTTGATTTCCTGGCTAATTCAATTCTGAAAGAGGTTCTCTCTGCGATTAAAAAGGGAAAGCCAGGTGCTTTTTCCCCTGGAAG
ACCTACTGAATTCTTGATAAATTACAAATCAAGCCTAGATTTCTTGGGTCATCTTGAAGGCTATTGTCCATCCAGATCTGCTGTCACTAAGTTTCGAGCT
GAAGCCATCTACGTTGAGTTCATGAAGCAATGGAATGTTGGGGTTTATTTCTCTTTGAGGTTCCAGGAAATAGCTGGTGCTCTGGATTCTGCACTTGCAA
CAACCAGTCTTATACCAGTTCACTATTCACCTTCTGGTAATGGAAGTTCTCAAGATTTAACATTAAAACAAAGCGTCACTCTTTTGGAGAGCCTGAGATC
TTGCTGGAGAGAAGATGTTCTCATCCACTCCTGCTCTGACAAGTTTCTTCGCTTAACATTGCAGCTTCTTTCAAGATTTTCAAATTGGTTGTTATCTGGG
CTGGCTGCTCGTAAGACGGGTAATACTGGCTCCAACTCCGGATATGAATGGGCAGCTTCAGCAGTTCCTAATGATTTCCTCTATATTATTCATGACATAA
ATTGTTTGGCCACTGAGGTTTGTGGAGATTACCTTGAGCATGTGCTTCAGCTTCTATCTTCATGTTCCGCTGATGTACTTGATCTAGTAAAACAAAGCAT
TTTACAAGGTGGGAAGTCATTAAATGACTTAACACCTTTAGCTATCAATGCAATCACAGATGCACTAGTTGATGAGGCTGTTAAGGGCTTGAAAGACGTA
AAGGCAATTGCTACGACTTTCAGGATGACTAATAAGCCTATTCCTAGCAGACATTCACTCTATGTATCCGGGTTGTTAAGCCCCTTAAAGAAGGATTTTC
TGGATATGGAAAAACACAACCCTTATTTGACTAGGGAGACTGTTAAGGAGTTACGGCATGGTGCTGCAACTGAGATTACTGGTCGTTATTATGACATGGT
TGTTGAAATCGTCAGTGTGGCTAGGAAGACAGAGTCTTCACTCCAGAGATTAAAGAAGGGTGCCCAAAGACGAGCTGGAGTAAGCTCAGATGTGTCAGAT
CCCTCTGTATCTGATACTGACAAGCTATGTATGCAATATTTCCTTGATATTCAGGAGTATGGACGTAACCTCTCTACCCTTGGGGTTGATGCAAAAGAAA
TTCCTGCATATCGATCCCTATGGCAATGTGTCGCTCCCCCAGATAGACAAAACGTGATTGATTTGTGA
AA sequence
>Potri.012G096100.1 pacid=42782744 polypeptide=Potri.012G096100.1.p locus=Potri.012G096100 ID=Potri.012G096100.1.v4.1 annot-version=v4.1
MAVDPIQILPPPRSATDFFSDPLDFHPLWFKPDLFLSPNFDSDSYISELRTFVPFDTLRSELQAHLTSLNHELIDLINRDYADFVNLSTKLVDVDSAVVR
MRAPLLELREKIEGFRGSVESSLVALKNGLEQRSEATATREVLELLLDTFHVVSKVEKLIKELPSVPADWSNGDVNLTEKNAASNGSIENGTNVRETQSM
LLERIASEMNRLKFYIAHAQNLPFIQNMEKRIQGASLLLDASLGHCFVDGLEHRDENAIYNCLRAYAAIDNTSSAEEIFRTTIVAPLIQKIIPHGPSGGV
VGASGDGLEIDYQEIKKCTEKDCKFLLEISSAENSGLHVFDFLANSILKEVLSAIKKGKPGAFSPGRPTEFLINYKSSLDFLGHLEGYCPSRSAVTKFRA
EAIYVEFMKQWNVGVYFSLRFQEIAGALDSALATTSLIPVHYSPSGNGSSQDLTLKQSVTLLESLRSCWREDVLIHSCSDKFLRLTLQLLSRFSNWLLSG
LAARKTGNTGSNSGYEWAASAVPNDFLYIIHDINCLATEVCGDYLEHVLQLLSSCSADVLDLVKQSILQGGKSLNDLTPLAINAITDALVDEAVKGLKDV
KAIATTFRMTNKPIPSRHSLYVSGLLSPLKKDFLDMEKHNPYLTRETVKELRHGAATEITGRYYDMVVEIVSVARKTESSLQRLKKGAQRRAGVSSDVSD
PSVSDTDKLCMQYFLDIQEYGRNLSTLGVDAKEIPAYRSLWQCVAPPDRQNVIDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24840 unknown protein Potri.012G096100
[exp]
0 1
AT3G50590 Transducin/WD40 repeat-like su... Potri.007G041000
[exp]
4.24 0.9154
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.009G138200
[exp]
7.00 0.9118
AT1G71270 ATVPS52, TTD8, ... T-DNA TRANSMISSION DEFECT 8, P... Potri.006G027100
[exp]
7.41 0.9199 Pt-POK.1
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.003G056300
[exp]
7.87 0.9156
AT2G02860 ATSUT2, ATSUC3,... ARABIDOPSIS THALIANA SUCROSE T... Potri.010G093600
[exp]
8.18 0.8772 SUC3.1
AT5G24710 Transducin/WD40 repeat-like su... Potri.006G081800
[exp]
8.48 0.8998
AT5G08390 Transducin/WD40 repeat-like su... Potri.010G255400
[exp]
9.32 0.8916
AT3G26000 Ribonuclease inhibitor (.1) Potri.008G179800
[exp]
12.84 0.8888
AT1G60070 Adaptor protein complex AP-1, ... Potri.016G104700
[exp]
14.00 0.9149
AT1G05090 dentin sialophosphoprotein-rel... Potri.002G227200
[exp]
15.90 0.9060

Potri.012G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.