Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02480 1153 / 0 AAA-type ATPase family protein (.1) AT1G02890 1126 / 0 AAA-type ATPase family protein (.1.2) AT4G24860 998 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 983 / 0 AAA-type ATPase family protein (.1) AT1G64110 497 / 4e-159 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G19740 501 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 484 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52882 479 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 476 / 5e-151 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27680 288 / 6e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094100 [exp] 2073 / 0 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 1216 / 0 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 1206 / 0 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G097600 [exp] 510 / 4e-164 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.005G093300 [exp] 506 / 1e-160 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 497 / 4e-159 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 496 / 6e-159 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 494 / 1e-155 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G133700 [exp] 488 / 1e-155 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010282 [exp] 1106 / 0 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 1101 / 0 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 532 / 3e-170 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 520 / 2e-165 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 501 / 9e-161 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 493 / 3e-157 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 491 / 1e-156 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039309 [exp] 487 / 5e-155 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 486 / 6e-155 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 432 / 2e-131 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.012G096300.3 pacid=42783739 polypeptide=Potri.012G096300.3.p locus=Potri.012G096300 ID=Potri.012G096300.3.v4.1 annot-version=v4.1 ATGGTTTCAACGAGAAGGAGTGGATCTCTTTCTGCTAACAATAACAGCAAGAGATCTTCCTCCTCAGATGACAATAATAACAATAACAGCAAGAGATCTT CTTCCTCAGAGGATAATAATAAGCCACCATCACCTAAACGTCAAAAGGGAGAGAATGGTGGAATTACGGAGAAACCGATGCCGACGACAGATAATTCTAA GGAATCGAGTCCACCGGAGGAGGAGGATCCCGACGACGGTGGACCTGGAGATGCTCCGACTACTGGTGGTGGTGGTAGAGGCGCTTTGATTTCGGGGAAA GGTCAGGAAACGGCGACGCCGGCGGTGGCTGTTGTGACGCCGATCGCTGAAGGTTCTACTCCGGTTGTACTGGAGAAACCGCGGAGTTCGTTATCGACTT GGAGTTTATATCAAAAGCAGAATTCAAGTTTCGAAACGCCTTGGTGTAAGCTGCTGACACAGTCTGCTCAGAATCAGAATATAGTAATTTGCACGTCCAG TTATTCGATTGGTACGACTAAACAATGCGATTTTATATTGAAGGATCACACAATGGGCGCGATTCAATGCAAGATTAGACACACACAGCGCGAAGGAAGT GCTGTTGCTGAGCTAGAAAGCTCGGGGACCAAGGGATCAGTGCAAGTAAATGGGACAGCTGTCAAAAAGGGTGCTATCTGTGTGCTTAATTCAGGAGATG AGGTGGTCTTTGGTGCGGCCGGGAACCATGCCTATATTTTTCAGCAACTCCTGACTGAGGTTGCGGTTAAGAGTGCTGAAGTTCATAGTAGCCTGGGGAA ACTCTTGCAACTCGAAAGGAGGTCAGGGGATCCATCGGCTGTTGCTGGGGCCTCAATATTGGCGTCTCTTTCAAGCCTCAGGCCTGATTTATCACGCTGG AAGTCTCCAGGACAGACTGCCAGTAAAATACACCATGGGACTGAGGTGCCTGCTCAGTCAGTTGTTCATGGTGGTGCGGAGGTTGAGCTTGATGGCATGG AAGGCAATTCAACTCCAAATTTAGGGAGTGATAAAGCTGCAGAGGTTGGAGCAATCAACCAGAATCTTCCTCACGATTGCAGCCAGGACTCTGGCACAGA GGCAGGCAATGTAAAAATCTCTGGGATGAATGATTTGATAAGGCCTTTCTTCAGGATGTTAGCTCGATCATCTAGTTGTAAACAAAAATTGAGCAAAAGT ATCTGTAAACAGGTATTGGAAGAAAGGAACGAGTGGCCGAAGGATTCGCAGCTGGCATCGACCTCGGGTATGTCATTGCGGTGTGCGGTATTCAAAGACG ACCTTCACGCTGGAATTCTCAATGGAAAAAACATAGAAGTTTCATTCGATAATTTCCCATACTATTTAAGTGAGAATACAAAAAATGTGCTGATTGCAGC TTCATTTATACACCTGATGCACAAAAAATATGCAAAATATACCTCAGAACTAACTACAGTCAATCCGCGTATTCTGCTTTCTGGCCCCGCAGGTTCTGAG ATATACCAGGAGATGTTGGCAAAGGCACTTGCCAATTACTTTGGCGCTAAATTGCTTGTATTTGATAGTCATTCATTTTTGGGTGGTTTGTCTTCCAAGG AAGCCGAGCTTTTGAAGGATGGAACTAATGCAGAAAAATCCTGCACTTGTTCTAAACAAGTTCCTGTGACAACAGACCCATCAAAGAGTGTGAATATATC AGCTGGTGAAACAGACACACCTAACTCTTCAAATGCACCTGCTAGCCAGGAATTGTTTGAGATGGAAGACACCCTGCCTTCTTCTTCCGGTCCAGGAGCA CCGAGGAATCGCTTGTTTAAAATAGGTGACAGAGTGAAATTTACAAGCTCATCTTCTAGTGTCTTATATCAAACAGCATCAGCATCAAGGTTCAGTACTT CTCTTGATCAGGGCCCACCTTATGGGATTCGTGGGAAGGTTGTTTTGCCTTTTGAGGACAATCCTTTGTCAAAAATCGGTGTGAGATTTGATAAACCAAT ACCTGATGGTGTTGATCTTGGAGATGTTTGTGAGAAAGGTCATGGATATTTCTGTAATGTTACTGATCTTCGTTTGGAGAACACAGCTGTAGAAGATTTG GACAAATTACTCATTAACACATTGTTTGAGGCTGTACACAGCGAGAGCAGAAATTCTCCTTTCATTTTGTATATGAAAGATGCAGAGAAATCTATTGTAG GCAATTCGGATTCATATTCTACATTCAAAAGCAGACTCGAAAAGCTTCCTGATAATGTGGTAGTAATTGGTTCTCACACACAAAATGACAATCGGAAAGA GAAGTCACATCCTGGTGGTCTTCTTTTCACAAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCTTTTCCGGATAGTTTTGGAAGACTTGGTGAC AGGGGGAAGGAAGTGCCAAAGGCAACAAAGCTTCTGACTAAGCTCTTTCCAAATAAAGTAGCTATTCATATGCCACAGGATGAAGCGCTACTAGCATCTT GGAAGCATCAGTTGGATCAAGATGCTGAAACTCTTAAAATGAAGGGGAACCTAAACAACCTTCGCACTGTTTTGGGCCGGTGTGGGATGGAATGTGAAGG ACTTGAGACATTATGCATCAAGGATCAAACACTCACAAATGAAAGTGCAGAGAAGGTAGTTGGTTGGGCACTGAGTCATCATCTAATGCAGAATTCAGCT AATGCTGATGCTGATGTGAAGCTTGTTTTGTCCAGCGAGAGCATCCAATATGGGATTGGAATCTTGCAGGCCATCCAGAATGAATCTAAAAGCTTGAAGA AGTCACTCAAGGATGTCATGACAGAAAATGAATTTGAGAAAAGGCTTTTAGCTGATGTTATTCCACCTAATGACATTGGAGTTACATTTGATGATATTGG AGCTCTTGAGAATGTCAAGGACACGTTGAAAGAGTTGGTGATGCTTCCTTTACAAAGGCCGGAACTTTTCTGCAAGGGGCAATTAACCAAGCCTTGCAAG GGCATACTTTTATTTGGACCTCCTGGAACTGGAAAGACTATGCTAGCTAAGGCAGTGGCAACTGAAGCTGGTGCTAATTTCATCAACATTTCAATGTCCA GCATCACGTCTAAGTGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTATTCTCGCTAGCCAGTAAAATTTCCCCGAGTGTTGTCTTCGTTGATGAGGT TGACAGCATGTTGGGCAGGAGGGAAAATCCGGGAGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAATTGGGATGGTCTACGAACAAAA GATACAGAACGAGTTCTTGTACTTGCAGCTACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATTAGAAGGCTGCCACGAAGATTGATGGTAAATCTGC CTGATGCTCCAAATAGAGCAAAGATACTCAAAGTCATTTTGGCAAAAGAAGATTTGTCTCCTGATATTGATTTTGAGGCAATTGCCAGCATGACCGATGG ATATTCTGGAAGTGACCTTAAGAACCTATGCGTAGCTGCTGCTCACAGACCAATTAAAGAGATATTGGAAAAGGAAAAGAAGGAACAGGCTGCGGCTGTA GCAGAAGGTAAGCCTGCCCCAGCTTTAAGTGGGAGTGCTGATATCCGGCCCCTAAACATGGTCGACTTTAAAGATGCTCATGAACAGGTATGTGCAAGTG TTTCATCTGAGTCAGTAAACATGACTGAGCTCTTGCAATGGAATGAACTATATGGAGAAGGTGGTTCTAGAAGAAAGAAGGCTCTTAGCTATTTTATGTA A
AA sequence Show only first row Show all	>Potri.012G096300.3 pacid=42783739 polypeptide=Potri.012G096300.3.p locus=Potri.012G096300 ID=Potri.012G096300.3.v4.1 annot-version=v4.1 MVSTRRSGSLSANNNSKRSSSSDDNNNNNSKRSSSSEDNNKPPSPKRQKGENGGITEKPMPTTDNSKESSPPEEEDPDDGGPGDAPTTGGGGRGALISGK GQETATPAVAVVTPIAEGSTPVVLEKPRSSLSTWSLYQKQNSSFETPWCKLLTQSAQNQNIVICTSSYSIGTTKQCDFILKDHTMGAIQCKIRHTQREGS AVAELESSGTKGSVQVNGTAVKKGAICVLNSGDEVVFGAAGNHAYIFQQLLTEVAVKSAEVHSSLGKLLQLERRSGDPSAVAGASILASLSSLRPDLSRW KSPGQTASKIHHGTEVPAQSVVHGGAEVELDGMEGNSTPNLGSDKAAEVGAINQNLPHDCSQDSGTEAGNVKISGMNDLIRPFFRMLARSSSCKQKLSKS ICKQVLEERNEWPKDSQLASTSGMSLRCAVFKDDLHAGILNGKNIEVSFDNFPYYLSENTKNVLIAASFIHLMHKKYAKYTSELTTVNPRILLSGPAGSE IYQEMLAKALANYFGAKLLVFDSHSFLGGLSSKEAELLKDGTNAEKSCTCSKQVPVTTDPSKSVNISAGETDTPNSSNAPASQELFEMEDTLPSSSGPGA PRNRLFKIGDRVKFTSSSSSVLYQTASASRFSTSLDQGPPYGIRGKVVLPFEDNPLSKIGVRFDKPIPDGVDLGDVCEKGHGYFCNVTDLRLENTAVEDL DKLLINTLFEAVHSESRNSPFILYMKDAEKSIVGNSDSYSTFKSRLEKLPDNVVVIGSHTQNDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLGD RGKEVPKATKLLTKLFPNKVAIHMPQDEALLASWKHQLDQDAETLKMKGNLNNLRTVLGRCGMECEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNSA NADADVKLVLSSESIQYGIGILQAIQNESKSLKKSLKDVMTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK DTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDIDFEAIASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKEQAAAV AEGKPAPALSGSADIRPLNMVDFKDAHEQVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	0	1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.015G049500 [exp]	1.00	0.8649	SCD1.3
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	1.73	0.8164
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	2.82	0.8215
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	6.92	0.7935
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	12.24	0.7899
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.016G081000 [exp]	12.40	0.7534
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	14.49	0.7858
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	14.69	0.7288
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	15.49	0.7309
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	15.49	0.7646

Compare expression of checked genes

Potri.012G096300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.