Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EEF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G30230 268 / 2e-91 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2) AT5G12110 186 / 3e-59 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) AT5G19510 157 / 6e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094200 [exp] 306 / 2e-106 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.009G018600 [exp] 162 / 6e-50 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.001G224700 [exp] 158 / 3e-48 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037618 [exp] 256 / 1e-86 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10013555 [exp] 254 / 1e-85 AT2G18110 313 / 3e-109 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10017261 [exp] 249 / 6e-82 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10036101 [exp] 158 / 4e-48 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10026784 [exp] 158 / 5e-48 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00736 [poplar] [flax] EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence Show only first row Show all	>Potri.012G096400.4 pacid=42782758 polypeptide=Potri.012G096400.4.p locus=Potri.012G096400 ID=Potri.012G096400.4.v4.1 annot-version=v4.1 ATGGCAGTCGCTTTCTACGATCTCACCTCAGCCGCTGGCCTCAAGAAGCTCGATGACTATCTCCTTTCCCGCAGTTACATCTCAGGATACCAAGCCTCAA AGGACGATCTCACTGTTTTTACAGCATTTTCAAGTGCACCAGCAGCTGAATACGTGAACGTGTCTCGGTGGTATACTCATATTGATGCGCTCTTGAGGAT CTCTGGTGTTGAAGCTGAAGGGTGTGGAGTAGTAGTTGAGGGATCTGCTCCCATCACAAAGGAGGCAATTGCCACTCCTCCATCTGCAGACACAAAGGCT GCTGCTGATGAGGATGATGATGATGATGATGATGTGGATCTGTTTGGTGAAGAGACCGAGGAGGAAAAGAAGGCTGCTGAAGAACGTGCAGCTACTATTA AGGCTTCTTCAAAGAAGAAAGAGTCTGGCAAGTCATCTGTTTTGTTGGATGTGAAACCATGGGATGATGAGACTGACATGAAGAAGCTCGAGGAAGCAGT CAGAAGTGTTGAGATGGAAGGTCTTTTTTGGGGAGCATCCAAGCTTGTACCTGTGGGATATGGCATTAAGAAAATGACAATCATGCTAACAATTGTTGAT GACTTGGTCTCCGTGGACACTCTTATTGAGGAACGTCTGACAGTCGAACCCATCAACGAGTATGTCCAGAGTTGTGACATCGTGGCCTTCAACAAAATCT AA
AA sequence Show only first row Show all	>Potri.012G096400.4 pacid=42782758 polypeptide=Potri.012G096400.4.p locus=Potri.012G096400 ID=Potri.012G096400.4.v4.1 annot-version=v4.1 MAVAFYDLTSAAGLKKLDDYLLSRSYISGYQASKDDLTVFTAFSSAPAAEYVNVSRWYTHIDALLRISGVEAEGCGVVVEGSAPITKEAIATPPSADTKA AADEDDDDDDDVDLFGEETEEEKKAAEERAATIKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMEGLFWGASKLVPVGYGIKKMTIMLTIVD DLVSVDTLIEERLTVEPINEYVQSCDIVAFNKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18110			Translation elongation factor...		Potri.012G096400 [exp]	0	1	Pt-EEF1.2
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.017G001800 [exp]	3.16	0.8208	Pt-COS1.2
AT5G35530			Ribosomal protein S3 family pr...		Potri.018G049100 [exp]	6.55	0.8599
AT3G13674			unknown protein		Potri.018G082800 [exp]	10.72	0.8111
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.009G039600 [exp]	12.68	0.7718	TIM10.1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065700 [exp]	14.42	0.8018	LOS1.1
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.010G066400 [exp]	16.97	0.8113	Pt-RPL23.6
AT5G45775			Ribosomal L5P family protein (...		Potri.006G181501 [exp]	17.34	0.8031
AT3G26340			N-terminal nucleophile aminohy...		Potri.008G177000 [exp]	17.66	0.7876	Pt-PBE1.2
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	18.00	0.7653
AT1G17880		ATBTF3	basic transcription factor 3 (...		Potri.015G029800 [exp]	20.19	0.8078

Compare expression of checked genes

Potri.012G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.