Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63440 442 / 4e-160 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) AT1G49170 66 / 7e-14 Protein of unknown function (DUF167) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094300 [exp] 451 / 2e-163 AT5G63440 429 / 5e-155 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Potri.005G056500 [exp] 56 / 6e-10 AT1G49170 172 / 1e-56 Protein of unknown function (DUF167) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016760 [exp] 447 / 4e-162 AT5G63440 439 / 8e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Lus10022455 [exp] 442 / 4e-160 AT5G63440 439 / 9e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Lus10033521 [exp] 44 / 2e-05 AT1G49170 151 / 3e-48 Protein of unknown function (DUF167) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02594 [poplar] [flax] DUF167 Uncharacterised ACR, YggU family COG1872
Representative CDS sequence Show only first row Show all	>Potri.012G096500.1 pacid=42782649 polypeptide=Potri.012G096500.1.p locus=Potri.012G096500 ID=Potri.012G096500.1.v4.1 annot-version=v4.1 ATGCCGAAGAGGACAACGCACACGTACTCAAGCGAGGACGCAGCTCCCGACGGACCAGACTCGGATCTCTTCGTCTACTATTGCAAGCATTGTGGCTCTC ACGTCCTCATCACTGATACGCAATTGCAGAAAATGCCGAAAAGGAAGACTGACAAAGCTTATGCATTGGACAAGAAGAAGCATCTTGCAAGGCTTAACGT TGACGAGGCTGGAAAAGTTGTCTTGAAAAGGGGTGAAGGGAAATTGGAGAAGCAATTTCGTATGAATTGCATGGGCTGTGGGTTGTTTGTTTGCTATCGA GCAGAAGAAGATCTGGAATTTGCTTCTTTTATATATGTTATAGATGGTGCACTTAGCACAATTGCTGCCGAAACAAACCCTCAGGATGCTCCAGTGCCCC CTTGCATATCACAATTAGGAGGACTTGTGCAGGTGGCCATCGAGGTTGAAGACCGTGCACAAAGATCAGCAATAACAAGAGTGAATGCTGATGATGTTCG AGTTACTGTAGCTGCACCTGCTGCCCGTGGAGAAGCTAACAATGAACTTTTGGAATTCATGGGCAGGGTTTTGGGTCTGAGGTTGAGCCAGATGACTCTT CAAAGAGGATGGAATAACAAATCCAAGCTGCTTGTTGTGGAGGATCTATCTGCTAGACAGGTTTATGAGAAACTACTAGAAGCTGTACAACCCTGA
AA sequence Show only first row Show all	>Potri.012G096500.1 pacid=42782649 polypeptide=Potri.012G096500.1.p locus=Potri.012G096500 ID=Potri.012G096500.1.v4.1 annot-version=v4.1 MPKRTTHTYSSEDAAPDGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYALDKKKHLARLNVDEAGKVVLKRGEGKLEKQFRMNCMGCGLFVCYR AEEDLEFASFIYVIDGALSTIAAETNPQDAPVPPCISQLGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGRVLGLRLSQMTL QRGWNNKSKLLVVEDLSARQVYEKLLEAVQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63440			Protein of unknown function (D...		Potri.012G096500 [exp]	0	1
AT4G35140			Transducin/WD40 repeat-like su...		Potri.009G139000 [exp]	1.00	0.8137
AT3G52105			unknown protein		Potri.001G267501 [exp]	10.53	0.6873
AT2G46540			unknown protein		Potri.014G100250 [exp]	10.81	0.6869
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.008G005800 [exp]	11.66	0.7611
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	12.36	0.7920
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.012G104700 [exp]	13.03	0.7496
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G011200 [exp]	14.14	0.7406
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	14.45	0.7292
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Potri.014G130000 [exp]	16.94	0.6820	Pt-EID1.2
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104100 [exp]	19.62	0.7407

Compare expression of checked genes

Potri.012G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.