Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 565 / 0 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 494 / 3e-172 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 49 / 7e-07 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 49 / 7e-06 SWIB complex BAF60b domain-containing protein (.1) AT4G34290 45 / 2e-05 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 45 / 6e-05 SWIB complex BAF60b domain-containing protein (.1) AT2G14880 41 / 0.0004 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094500 [exp] 786 / 0 AT5G14170 580 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.017G069300 [exp] 596 / 0 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.001G331400 [exp] 578 / 0 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 53 / 3e-07 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 46 / 6e-06 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.004G145200 [exp] 46 / 6e-05 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G092200 [exp] 43 / 0.0001 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.009G106700 [exp] 44 / 0.0002 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 42 / 0.0008 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016761 [exp] 574 / 0 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10022456 [exp] 563 / 0 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10032049 [exp] 559 / 0 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10035214 [exp] 462 / 1e-161 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 50 / 5e-07 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 45 / 5e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 44 / 0.0003 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 42 / 0.0006 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [poplar] [flax] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Potri.012G096700.4 pacid=42782887 polypeptide=Potri.012G096700.4.p locus=Potri.012G096700 ID=Potri.012G096700.4.v4.1 annot-version=v4.1 ATGAATAATAATAGTAGTAATCCTGGAAGAAGTATTGGGGTTCCGCCCTCGTTTGTGAATTCTGTTGCAAAGGCACAATCTATGCACGTGAACCACCAAG CACCGCAGTTGCTATCACAGTCACAACCTCAAACACAAGTTGGGCATCCGGGCCACTTTCAGCTGTCCGAGCCGCAAGCTCAGGTCCTGGGACATGCTCA GTATGCACAGGCAGCTCATGCTCACTTTCAATCTCAGATACAATTGGCCAACCAATCCATTGCTCAGTTGCAAAATGTCAATTCTGGTAATGTTGGTGTA CAATCACCTCCTGTAGCCACGCCTAGCATTACTAGTGCTAAAAAGTCCAGCCATAAACCGCCTTCAAGGCCTTCAGGTGGTTCATCAAATGCCAACATGG CTTCACTGTTTAAGACCATGGAGTTGACTCCAGCTGCTCATAGGAAGAAAAGGAAGCTTCATGAGAAGGAGATACCTGAAAAAGTGGCAGCTCTTTTGCC AGAGTCTGCACTTTATACCCAGCTGCTTGAATTTGAGGCTAGAGCGGATGCTGCTATGGCAAGAAAGAAGATGGATATTCAAGAGTCACTTAAAAACCCT CCACGTGTTCGGAAAACACTTCGGGTATATGTATTTAACACTTTTGAAAATCAGGTGCAAGGGGCTAACGAGAGGAAGAATGCTGAGCCTCCTTCTTGGT CATTAAAGATCATTGGGAGGATATTGGAAGATGGGAAAGACCCTGTGCTGACTGGAATGATCCAGAAATCATATCCAAAATTCTCGTCTTATTTCAAGAA AATTACAATATACTTGGACCAGAGCCTGTATCCAGATAACCATGTAATTTTATGGGAGAGCACACGGTCACCTGTTCTTCATGAGGGCTTTGAGGTCAAG AGAAAAGGAAATAAGGAATTTACTGCAAGAATTAGGCTGGAAATGAATTATGTGCCTGAGAAATTCAAGCTTTCACCTGCTCTTTCAGAAGTCCTTGGAA TTGAGATAGAGACTCGCCCCAGAATTTTGGCGGCAATTTGGCATTATGTGAAGTCTAGGAAGTTGCAGAACCCAAATGATCCCTCCTTCTTCACATGTGA CCCCCTTCTTCAGAAACTATTTGGGGAAGAGAAGATGAAATTTTCTCTGGTTTCACAGAAGATAAGTCTGCATTTAACCCCTCCACAGCCTATTCATTTG GAACATAAGATCAAGCTCTCAGGGAATTTCCCAGCTGGAACTACTTGCTATGATTTCATAGTCGATGTTCCTTCACCATTACAAAAGGACCTTGCTGCGT ACTTGACCAGCACAGAGAGTAACAAAGAAATTGATGCTTGTGATGAATTAATAAGTAACTCTATACTGAAGATACATGAGCATCGTCGGAGGCGGGCTTT CTTTCTTGGTTTCAGTCAGTCTCCAGCAGAGTTTATTAATGCTTTGATTGCTTCTCAGAGCAAAGATCTGAAGCTTGTCGCTGGAGATGCTAGCCGCAAT GCAGAAAAAGAGCAGCGATCTGGTTTCTATAATCAGCCATGGGTGGAAGATGCTGTTATTCGTTACCTAAATCGCAAGTCTACAGGAAGTGATGCTCCTG GAAGCTCTTGA
AA sequence Show only first row Show all	>Potri.012G096700.4 pacid=42782887 polypeptide=Potri.012G096700.4.p locus=Potri.012G096700 ID=Potri.012G096700.4.v4.1 annot-version=v4.1 MNNNSSNPGRSIGVPPSFVNSVAKAQSMHVNHQAPQLLSQSQPQTQVGHPGHFQLSEPQAQVLGHAQYAQAAHAHFQSQIQLANQSIAQLQNVNSGNVGV QSPPVATPSITSAKKSSHKPPSRPSGGSSNANMASLFKTMELTPAAHRKKRKLHEKEIPEKVAALLPESALYTQLLEFEARADAAMARKKMDIQESLKNP PRVRKTLRVYVFNTFENQVQGANERKNAEPPSWSLKIIGRILEDGKDPVLTGMIQKSYPKFSSYFKKITIYLDQSLYPDNHVILWESTRSPVLHEGFEVK RKGNKEFTARIRLEMNYVPEKFKLSPALSEVLGIEIETRPRILAAIWHYVKSRKLQNPNDPSFFTCDPLLQKLFGEEKMKFSLVSQKISLHLTPPQPIHL EHKIKLSGNFPAGTTCYDFIVDVPSPLQKDLAAYLTSTESNKEIDACDELISNSILKIHEHRRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDASRN AEKEQRSGFYNQPWVEDAVIRYLNRKSTGSDAPGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	0	1
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	1.00	0.8979
AT2G24170			Endomembrane protein 70 protei...		Potri.018G106600 [exp]	3.16	0.8775
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	3.16	0.8837
AT4G31980			unknown protein		Potri.003G209500 [exp]	4.24	0.8929
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	4.24	0.8830
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G381700 [exp]	5.19	0.8913	Pt-SRG1.3
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.008G035700 [exp]	5.91	0.8825
AT5G59830			unknown protein		Potri.009G027800 [exp]	6.70	0.8782
AT4G28070			AFG1-like ATPase family protei...		Potri.018G100900 [exp]	7.48	0.8309
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	7.74	0.8909

Compare expression of checked genes

Potri.012G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.