Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48520 611 / 0 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 607 / 0 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G01900 552 / 0 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT3G56630 397 / 1e-133 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT2G27690 396 / 2e-133 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT1G34540 395 / 3e-133 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT5G23190 345 / 1e-112 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 334 / 2e-109 Cytochrome P450 superfamily protein (.1) AT1G13140 328 / 1e-106 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT1G24540 327 / 3e-106 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331100 [exp] 638 / 0 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.005G220900 [exp] 429 / 2e-146 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 429 / 2e-146 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 428 / 1e-145 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 423 / 6e-144 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.010G236700 [exp] 415 / 5e-141 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.016G031700 [exp] 415 / 6e-141 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 393 / 3e-132 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.009G145400 [exp] 392 / 3e-132 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041562 [exp] 598 / 0 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 586 / 0 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10014741 [exp] 429 / 3e-146 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 424 / 5e-144 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 418 / 5e-142 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 395 / 7e-133 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 351 / 3e-115 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10017394 [exp] 348 / 6e-114 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 347 / 8e-114 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 331 / 2e-107 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G096800.1 pacid=42782908 polypeptide=Potri.012G096800.1.p locus=Potri.012G096800 ID=Potri.012G096800.1.v4.1 annot-version=v4.1 ATGTTCATCTTTCTCATTATCTTTTGCAATCTAGGGTTTTACCTTCTCTCTTTCTTCTTCTCAGTCCTTCAAGAATTCTACGCCTCTCAAACAAAACCAC CCACCACTCATGGCCCTCCTTCTTATCCAATTATAGGCTGCCTAATCTCTTTCTACAAGAATCGCCGCTGCCTTTTAGACTGGTACACCAATCTTTTGTC GGTGTCACCAACACAAACCATTGTGGTGCAGCGGTTAGGTGCCCGCCGCATTATTGTCACGGCCAATCCGGAAAATGTTGAGTACGTCCTCAAGACCAAC TTCATTAACTTCCCTAAAGGAAAACCCTTTACTGAAATCCTTGGGGACCTTCTAGGGTGCGGCATATTCAATGCTGATGGTGAATTATGGAGCACTCAAC GTAAGTTGGCTAGCCATGAGTTCAGCACCAAGTCTTTGAGAGAATTCGTTGTTATGACACTACAAGAAGAGGTGGAAAATCGTCTAATACCGTTGTTAGA AGAGGCCGTGGAAGCTAAGAGTGTATTGGATTTGCAAGATTTGTTGAGGAGATTTTCATTTGATATTGTTTGTCGAGTTTCTCTGGGGACTGATCCTTCT TGCTTGGATTTTTCACGGCCCATCCCGCCACTTGTTAAAGCATTTGATGCTGCTTCAGAAATAAGCGCTATGCGTGGAATGGCGCCAGTTTATGCTGTGT GGAAGGCCAAGAAACTCTTCAATTTAGGGGCTGAGAAAAAACTGAAAGAAGCAATCAAGCTTGTTCATGATTCAGTCTCAGAAATTGTTAAGACCAAGAA GAGGGTTCTTGAAAATGATAGAGAAGGAAAATTGGAAAGTGATCTTCTGTCAAGATTATTACTAGCAGGGCACGGCGAGGAAGTTGTAAGAGATATGGTG ATAAGCTTCATCATGGCAGGGAGAGATACAACATCAGCAGCAATGACTTGGCTATTTTGGTTGCTTTCAAAGCATCGAAACTCTGAGAAAATGATCGTGA AAGAAGTAAAATCATTGCTTGACGATCGTGAAAAGGCAATTGATTATGAAGTTTTAAAAGGCATGAATTTCTTGAAGGCAAGTTTATGTGAGTCCATGAG GCTGTACCCTCCAGTTCCATGGGACTCAAAGCATGCTATTATTGATGATGTCTTGCCGGACGGAACTTCTGTCAGAAAGGGAGATAGAGTGACCTATTTT CCCTACGGAATGGGCAGAATGGAAAAATTGTGGGGTAAGGACCGGTTTGAATTTAGACCAGACCGGTGGTTTCAAGAAATCGGTAATGATCAGACATTGA AATCGGTGAGTCCATATACGTTTCCTGTCTTTCAAGCCGGTCCAAGGGTGTGCCTAGGGAAGGAGATGGCTATGATACAGATGAAATATGTGATGGCTTC CGTATTGAGGCGGTTCGAGATCAAACCGGTTTTTGATAACGAACCGGTTTTTGCTCCTCTATTGACAGCTCACATGGTTGGTGGGTTGAAGGTTATGGTC AAGAGAAGGAATGGAAATGGTGATATTTGA
AA sequence Show only first row Show all	>Potri.012G096800.1 pacid=42782908 polypeptide=Potri.012G096800.1.p locus=Potri.012G096800 ID=Potri.012G096800.1.v4.1 annot-version=v4.1 MFIFLIIFCNLGFYLLSFFFSVLQEFYASQTKPPTTHGPPSYPIIGCLISFYKNRRCLLDWYTNLLSVSPTQTIVVQRLGARRIIVTANPENVEYVLKTN FINFPKGKPFTEILGDLLGCGIFNADGELWSTQRKLASHEFSTKSLREFVVMTLQEEVENRLIPLLEEAVEAKSVLDLQDLLRRFSFDIVCRVSLGTDPS CLDFSRPIPPLVKAFDAASEISAMRGMAPVYAVWKAKKLFNLGAEKKLKEAIKLVHDSVSEIVKTKKRVLENDREGKLESDLLSRLLLAGHGEEVVRDMV ISFIMAGRDTTSAAMTWLFWLLSKHRNSEKMIVKEVKSLLDDREKAIDYEVLKGMNFLKASLCESMRLYPPVPWDSKHAIIDDVLPDGTSVRKGDRVTYF PYGMGRMEKLWGKDRFEFRPDRWFQEIGNDQTLKSVSPYTFPVFQAGPRVCLGKEMAMIQMKYVMASVLRRFEIKPVFDNEPVFAPLLTAHMVGGLKVMV KRRNGNGDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.012G096800 [exp]	0	1
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.015G074500 [exp]	2.00	0.9820
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	3.46	0.9786
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	6.78	0.9821
AT4G37290			unknown protein		Potri.007G049400 [exp]	12.64	0.9798
AT5G33280			Voltage-gated chloride channel...		Potri.018G124100 [exp]	12.96	0.9372
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.016G117100 [exp]	14.28	0.9558
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	19.44	0.9785
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030400 [exp]	20.00	0.9775
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	21.63	0.9747
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	22.04	0.9768

Compare expression of checked genes

Potri.012G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.