Plant FIBer expression Database

Potri.012G096900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63460 186 / 5e-61 SAP domain-containing protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G094600
[exp]
259 / 7e-90 AT5G63460 201 / 1e-66 SAP domain-containing protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016762
[exp]
189 / 4e-62 AT5G63460 180 / 1e-58 SAP domain-containing protein (.1.2.3.4)
Lus10022457
[exp]
176 / 3e-56 AT5G63460 169 / 2e-53 SAP domain-containing protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
CL0306 PF10172 DDA1 Det1 complexing ubiquitin ligase
Representative CDS sequence
>Potri.012G096900.2 pacid=42783839 polypeptide=Potri.012G096900.2.p locus=Potri.012G096900 ID=Potri.012G096900.2.v4.1 annot-version=v4.1
ATGGAGACCTCTTCTTCTCATCCATCCGATTCCAGTCCAAAGGCTGCCGGTGCTTCCAAGTTCCTCGCCAATCTTCCCTCCCGCGGCTTCTTGTCCTCCA
CTGTCTCCTCTTCCTCCTCCAATCCGGGTGGGATGCGGGTTTATATTTGCGAGCATGACACTTCACCCCCAGAGGGCCAACAAATAAAGACCAACCAGAC
AAACATTCTGATAAGATCACTCCAGCTTAATAAACAGAAGGGTGATTCCAGTTCAAAGGATGTGAAGGGGGTAGCTGCAAATGAGGGTTCTAGAAAGAGG
GCCCCAGAAAAAGCTTTGAATTCCAGGGCTTCAGCAAAGAGAGGCAATAATCAGATTGGTTCTCGACAAGATGAATCTGATAGCCGCACATCAGATAAGG
ACTATTACAGTTTGACAGTAGAGAGGCTCCGGGCTCTCCTGAAAGAGCGAGGTCTTTCACCCAAAGGAAGGAAGGATGAGCTGGTTGCAAGGTTGAGAGG
TGTGTAA
AA sequence
>Potri.012G096900.2 pacid=42783839 polypeptide=Potri.012G096900.2.p locus=Potri.012G096900 ID=Potri.012G096900.2.v4.1 annot-version=v4.1
METSSSHPSDSSPKAAGASKFLANLPSRGFLSSTVSSSSSNPGGMRVYICEHDTSPPEGQQIKTNQTNILIRSLQLNKQKGDSSSKDVKGVAANEGSRKR
APEKALNSRASAKRGNNQIGSRQDESDSRTSDKDYYSLTVERLRALLKERGLSPKGRKDELVARLRGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63460 SAP domain-containing protein ... Potri.012G096900
[exp]
0 1
AT5G24650 Mitochondrial import inner mem... Potri.012G004600
[exp]
4.00 0.7949
AT1G12300 Tetratricopeptide repeat (TPR)... Potri.017G133501
[exp]
5.74 0.6859
AT2G37500 arginine biosynthesis protein ... Potri.012G115900
[exp]
6.00 0.6990
AT3G20240 Mitochondrial substrate carrie... Potri.010G253600
[exp]
6.70 0.6717
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G034200
[exp]
12.12 0.6645
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Potri.002G198600
[exp]
13.63 0.7777
AT1G06010 unknown protein Potri.015G136500
[exp]
15.09 0.6858
AT5G05800 unknown protein Potri.010G076000
[exp]
27.62 0.6961
AT5G11340 Acyl-CoA N-acyltransferases (N... Potri.006G248900
[exp]
27.92 0.7074
AT4G17180 O-Glycosyl hydrolases family 1... Potri.006G002100
[exp]
28.84 0.6700

Potri.012G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.