Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48530 572 / 0 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G69800 258 / 1e-81 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT1G80090 47 / 2e-05 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1) AT1G15330 46 / 3e-05 AtPV42a Cystathionine beta-synthase (CBS) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094700 [exp] 754 / 0 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.017G053600 [exp] 238 / 8e-74 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.009G118700 [exp] 129 / 5e-33 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016763 [exp] 635 / 0 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10022458 [exp] 628 / 0 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10013265 [exp] 220 / 8e-67 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10030788 [exp] 209 / 8e-63 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10026352 [exp] 113 / 4e-27 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 107 / 5e-25 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10029432 [exp] 50 / 1e-06 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10004227 [exp] 49 / 7e-06 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.012G097000.1 pacid=42783342 polypeptide=Potri.012G097000.1.p locus=Potri.012G097000 ID=Potri.012G097000.1.v4.1 annot-version=v4.1 ATGGCAAGCATGCAGCTTATGAGAAGGGAAAGTGCTTTTGTTCATGAGGTTACGCAAGACAGTCCAAAAAGTCCAGAAGCAAGGCTGGGAATGAAAGTAG AGGATCTATGGGATGTTCAAGAACCACAGTTAACTCCAACTGAGAAACTTAACGCTTGCTTTGAGGGTATCCCTGTCTCTGCCTTCCCTCCCGCTCCTTC TTCTCAAGTGATCGAGATAAAATCAGACACCAGTCTAGCAGAGGCTGTTCGTATACTTGCAGAACACAAGATTCTTAGTGCTCCTGTGGTGGATGTTGAT GCTCCTGAGGATGCTAGTTGGATTGACAGATATATTGGAGTTGTTGAGTTTGCTGGGATTATAGTGTGGATTTTACATCAGTCGGAACCTCCATCACCCA GAAGTCCAACCTCGGGATCAGCTCTTGAAGCGGCTGTTAATAGAGTGACCAATGCTGCTAGTCTCGGAACCTTAGGTCCTGAAGATGCTGCAGCAACTTC TGGAAATTTTTTTGAGGCTCTGACTTCTTCCGAATTCTACAAGAACACAAAGGTTCGAGACATTGCAGGGTCATTCCGTTGGGCACCGTTTCTCGCTTTA CAGAAATCAAACTCCTTTCTGACCATGCTTCTGTTGCTTTCGAGTTACAAGATGAAGAGCATTCCAGTGGTTGATCTGGGTGAGGCGAAGATTGACAACA TCATCACCCAGTCTTCTGTTATTCACATGTTAGCGGAATGTGCTGGGCTTCAATGGTTTGAAAGTTGGGGAACAAGGAAACTTTCTGAAATTGGTCTTCC CTTGATGGCCCCTGATCGTATAGTCAAGGTGTACGAGGAAGAACCAGTGCTCCAGGCATTTAAGCTGATGAGGAAAAAAAAAATTGGTGGAATACCTATT GTTGATAGTAGCGGTGGAAAGGTAGTAGGCAACATAAGTATAAGAGATGTCCATTTCCTTTTAACTGCACCAGAGATCTACCACGATTATAGATCCATCA CGGCAAAGAACTTCTCGACTGCAGTTAACGGCTACTTGGAGACGCATCAAGAAATCTCACCTTTTGTGCGTGGCATGGTGATATGCACAAAAAACTACTC CATTAAAGAATTGATCATGAAGCTTGATTCTGAGAAAATCCACCGGGTATATGTCGTGGATGATGCTGGGAATCTGGAAGGGGTGATCACACTGAGGGAT ATACTATCAAGGCTTGTACACGAGCCCCGTGGCTACTTTGGTGATTTCTTTGACGGAGTGCTGCCATTACCTTCGAATAGTAGAGTTTAA
AA sequence Show only first row Show all	>Potri.012G097000.1 pacid=42783342 polypeptide=Potri.012G097000.1.p locus=Potri.012G097000 ID=Potri.012G097000.1.v4.1 annot-version=v4.1 MASMQLMRRESAFVHEVTQDSPKSPEARLGMKVEDLWDVQEPQLTPTEKLNACFEGIPVSAFPPAPSSQVIEIKSDTSLAEAVRILAEHKILSAPVVDVD APEDASWIDRYIGVVEFAGIIVWILHQSEPPSPRSPTSGSALEAAVNRVTNAASLGTLGPEDAAATSGNFFEALTSSEFYKNTKVRDIAGSFRWAPFLAL QKSNSFLTMLLLLSSYKMKSIPVVDLGEAKIDNIITQSSVIHMLAECAGLQWFESWGTRKLSEIGLPLMAPDRIVKVYEEEPVLQAFKLMRKKKIGGIPI VDSSGGKVVGNISIRDVHFLLTAPEIYHDYRSITAKNFSTAVNGYLETHQEISPFVRGMVICTKNYSIKELIMKLDSEKIHRVYVVDDAGNLEGVITLRD ILSRLVHEPRGYFGDFFDGVLPLPSNSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	0	1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Potri.006G027700 [exp]	1.41	0.8373
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	1.73	0.8011
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G007000 [exp]	2.82	0.7886
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	3.87	0.7710
AT1G14780			MAC/Perforin domain-containing...		Potri.002G234700 [exp]	4.89	0.7529
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	6.32	0.7588
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.018G097700 [exp]	8.48	0.7585
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	10.24	0.7339	BES1.2
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	12.72	0.7267	ADR1.1
AT5G57655			xylose isomerase family protei...		Potri.018G096049 [exp]	12.84	0.7537

Compare expression of checked genes

Potri.012G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.