Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50380 755 / 0 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 409 / 1e-134 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 395 / 1e-129 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 383 / 7e-125 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT3G29400 354 / 4e-113 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G03540 316 / 1e-98 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 308 / 6e-96 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G13150 309 / 7e-96 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT2G39380 288 / 4e-88 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT5G61010 287 / 9e-88 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094800 [exp] 1030 / 0 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 425 / 8e-141 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 419 / 1e-138 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 412 / 2e-135 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 372 / 4e-120 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.013G152900 [exp] 359 / 2e-115 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 349 / 1e-111 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.008G017800 [exp] 332 / 7e-105 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 325 / 5e-102 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016764 [exp] 845 / 0 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 763 / 0 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 405 / 8e-133 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 377 / 1e-124 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10031956 [exp] 382 / 8e-124 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 374 / 1e-120 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 309 / 7e-96 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 306 / 4e-95 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10005436 [exp] 303 / 1e-93 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 302 / 2e-93 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.012G097100.1 pacid=42783341 polypeptide=Potri.012G097100.1.p locus=Potri.012G097100 ID=Potri.012G097100.1.v4.1 annot-version=v4.1 ATGGCCACAACCACCACGACAAGCAGTCTAACCAGCGGAGGGGGAGGAGGAGGAGGCGGTGGAGCAGACGACCGTGTCATGGCAACAGCGCAGCAGATCG TGAACAGCTTAAACACTACAAAAAATGTACGCGAAGACATGTTATTAATCCTTTCGAGTTTTGATAACCGTTTATCGAACATATCCGACTTCATCAAAAC CGATTCGGAATCTCAGTCCTCCATTCTAGACGCCGCCGAGAAGATCATTCTCCGGTCAGACTCCGGCATGCCCTCCAACGCCGGAGCTTCTTCCTGGGAT GACTCGGCGGAGGAATCTAGATATTATTTAGCTGCTATTGATGAGATTCTTGATTTGTTAGATAATTTATCGGTCGGGCCTGATTCGGAGGTTTTGGACC GGGCGGAGACTCTGGTTCAAGTGGCTATGTCGAGATTGGAAGAGGAGTTTGGGCATATTCTGATAAGGAATACTGTTCCGCTTGACGCGGAAAGTTTGTA TGGATCTATTAGGAGGGTTTCGCTTTCATTTGCAGCGAATGAAGGGGAAATTGACGAGGAGTTTGAGAATTTTGGAGAAGTGGAGACTGGGAGTGTGTGT TTTCACGAGAGAGGAGCGAGTTTAGGAGATGATTTGTGTGTTGATTTGATTAATAACGAGGCGGTTATGGATTTGAAAGGGATTGCTGATAGAATGATGC GATCAGGGTATGAGAAAGAGTGTGTACAGGTTTATAGTAGTGTGAGAAGGGATGCTTTGGACGAGTGTTTGGTTATTTTGGGTGTTGAGAAGTTGAGTAT TGAGGAAGTGCAGAAGATAGAGTGGAAGCCTTTGGATGAGAAGATGAAGAAGTGGGTTCGGGCTGTTAAGATTGGTGTTAAGGTTCTTTTGAGAGGAGAG AAAAGGCTTTGTGATGTGATTTTTAGTGGGTCGGATTCGGCCAGGGAGGTTTGTTTTAATGAGACTGCAAAAGGGTGTTTGATGCAGTTGTTGAATTTTG CAGAGGCAGTGGCTATTGGAAGGAGGTCACCGGAGAAGCTGTTTAGGATTTTGGATATGTATGATGCATTGTCTGGTGTTTTCCCAGATTTGGAAGCTAT GGTTACGGATGAGTTTGTGTACAGTGAGGCGAAAGGAGTGTTGGCTGGTTTGGGAAGGGCGGCTAAAGGGACTTTTGTGGAGTTTGAGAATGCTGTGAAA AGTGAGACTTCTAGGAAGCCTATGTTAGGTGGAGTGATTCATCCACTTACACGGTATGTGATGAATTATGTGAAACTGCTTGTGGATTATAGTGATACGC TGAATTCACTTTTGGAGAACGATGATGATGATGAGTTAAATGGATTGCAAAATGATGATGGTGAGAGATTACAGTTAGAGAGCTTGAGTCCTATAGCAAG GAGATTGTTGGCCTTGTTATCGACTTTGGAGTCTAATCTCGAGGAGAAATCAACACTGTATGAGGATGGTGCAATGCAGTATATATTTCGTATGAATAAT ATTCTGTACATGGTGCAAAAAGTTAAGGATTCAGAACTTATTAAGATTTTGGGAGATCAATGGGTCCGCAAACACCGTGGCCAAATACGCCAATATGCCA CAGCGTATCTGAGGGCTGCTTGGACTAAGGCCTTGTCATGCTTGAAGGATGAAGGGATTGGTGGGAGTTCTAATAATGCCTCCAAAGTGGCTTTGAAGGA AAGGTTCAAGAATTTCAATGCGTGCTTTGAGGAAATATATAGGATTCAGACTGGTTGGAAGGTCCTAGATCCTCAACTTCGTGAAGAGCTTCGAATATCC ATATCTCAAAAGGTATTACCAGCTTATCGCTCATTTATGGGAAGGTTTGGTAGTCAGCTAGAGGGTGGAAGACATGCTGGGAAATACATAAAGTACACAC CAGATGATTTGGAGAATTATTTAATTGATTTGTTTGAAGGGACCCCCCTTGTTCTTCACCATCTTAGAAGAAAGAGTTCATAG
AA sequence Show only first row Show all	>Potri.012G097100.1 pacid=42783341 polypeptide=Potri.012G097100.1.p locus=Potri.012G097100 ID=Potri.012G097100.1.v4.1 annot-version=v4.1 MATTTTTSSLTSGGGGGGGGGADDRVMATAQQIVNSLNTTKNVREDMLLILSSFDNRLSNISDFIKTDSESQSSILDAAEKIILRSDSGMPSNAGASSWD DSAEESRYYLAAIDEILDLLDNLSVGPDSEVLDRAETLVQVAMSRLEEEFGHILIRNTVPLDAESLYGSIRRVSLSFAANEGEIDEEFENFGEVETGSVC FHERGASLGDDLCVDLINNEAVMDLKGIADRMMRSGYEKECVQVYSSVRRDALDECLVILGVEKLSIEEVQKIEWKPLDEKMKKWVRAVKIGVKVLLRGE KRLCDVIFSGSDSAREVCFNETAKGCLMQLLNFAEAVAIGRRSPEKLFRILDMYDALSGVFPDLEAMVTDEFVYSEAKGVLAGLGRAAKGTFVEFENAVK SETSRKPMLGGVIHPLTRYVMNYVKLLVDYSDTLNSLLENDDDDELNGLQNDDGERLQLESLSPIARRLLALLSTLESNLEEKSTLYEDGAMQYIFRMNN ILYMVQKVKDSELIKILGDQWVRKHRGQIRQYATAYLRAAWTKALSCLKDEGIGGSSNNASKVALKERFKNFNACFEEIYRIQTGWKVLDPQLREELRIS ISQKVLPAYRSFMGRFGSQLEGGRHAGKYIKYTPDDLENYLIDLFEGTPLVLHHLRRKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Potri.012G097100 [exp]	0	1
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	4.24	0.8215
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	6.16	0.8223
AT4G31170			Protein kinase superfamily pro...		Potri.006G280000 [exp]	7.07	0.8232
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	8.36	0.7875
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	12.96	0.8126
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	16.91	0.7579
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	18.13	0.7931
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.003G115500 [exp]	21.81	0.7499
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	22.64	0.7645
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	23.34	0.7063

Compare expression of checked genes

Potri.012G097100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.