Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 3440 / 0 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 3224 / 0 U5 small nuclear ribonucleoprotein helicase (.1) AT5G61140 1509 / 0 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 265 / 4e-72 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT4G32700 115 / 3e-25 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G79940 97 / 6e-20 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT4G21180 85 / 4e-16 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT1G59760 82 / 5e-15 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G28870 74 / 4e-13 unknown protein AT3G46960 72 / 4e-12 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 3987 / 0 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 1472 / 0 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 258 / 2e-69 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.018G036600 [exp] 112 / 4e-24 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.004G072200 [exp] 91 / 5e-18 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 89 / 2e-17 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.004G228700 [exp] 86 / 2e-16 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 86 / 3e-16 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 82 / 2e-15 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016048 [exp] 3603 / 0 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 3269 / 0 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 1372 / 0 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10042628 [exp] 926 / 0 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10042629 [exp] 380 / 1e-119 AT1G20960 402 / 3e-128 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10022082 [exp] 372 / 1e-111 AT1G20960 379 / 2e-114 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025169 [exp] 333 / 2e-103 AT1G20960 283 / 3e-87 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10014551 [exp] 247 / 5e-66 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10032137 [exp] 220 / 2e-57 AT3G27730 1291 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10029613 [exp] 124 / 2e-28 AT2G33840 599 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF02889 [poplar] [flax] Sec63 Sec63 Brl domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.012G097300.1 pacid=42784345 polypeptide=Potri.012G097300.1.p locus=Potri.012G097300 ID=Potri.012G097300.1.v4.1 annot-version=v4.1 ATGGCGCATCTGGGTGGTGGTGCTGAGGCACACGCTCGATTCAAGCAATACGAGTACAGAGCCAATTGCAGTCTGGTTCATACTACTGATACTCGACAAC GTGATACTCATGAGCCCACTGGTGAACCTGAGTCTCTCTGGGGCAGGATTGACCCTAGAAGTTTTGGTGACCGTGCTCACAGAGGGAGACCTTCTGAGTT AGATGAGAAGATTAACAAGGCTAAGGGGAAGAAGAAGGAGCGTGATGCTCTTTCTGAAGCTGTCCGTGGTTGCCAAGCTAAGAGGCGCCGCCTTAGAGAG GAGAGTGTCCTTACTTCTACTGAGGAGGGCGTTTACCACCCCAAGACCAAGGAAACTAGAGCTGCCTATGAAGCTATGCTAAGTGTCATTCAGCAGCAAT TGGGTGGTCAGCCTCTTAATATTGTTAGTGCTGCCGCTGATGAGATTTTGGCTGTTCTCAAGAACGAGTCTGTTAGGACGCAGGACAAGAGGAAGGAGAT TGAGAAGTTGTTGAACCCTATTCCCAACAGTATGTTTGATCAGTTTGTTTCAATTGGTAAGCTTATCACTGATTACCAAGATGGGGGTGATGGTGCTGGG GTCTCCGTTGCTAATGGTGATGATGTCCTTAATGATAATGTGGGTGTTGCTGTGGAGTTTGATGAGGACAATGAAGATGAGGAAGGGGATAGTGATCTGG ATATGGTGCCACAGGAGGAGGAGGAGGAGGAAGAGGATGATGATGTGGTGGAAGCAGGTGGTTCTGGGGCCATGCAGATGGGTGGCAGAATCGATGATGA TGAAATGAGGGGGGCAAATGAGGGAATGAACCTTAATGTTCAGGATATTGATGCTTATTGGCTACAAAGGAAGATTTCACAAGCTTATGAACAGCAGATT GATCCACAACAGTGCCAGAAGCTAGCAGAAGAAGTGCTGAAGTTACTTGCCGAGGGAGATGACAGGGAAGTTGAAACGAAGTTGCTGTTACATCTCCAGT TTGATAAGTTCAGCTTTATAAAGTTTCTTTTGTGGAACAGGCTGAAGATTGTCTGGTCTACACGTTTAGTTAGGTCCAAAGATCAGGAGGAGAGGAAGCA GATAGAGGAGGAAATGATGGGTTCAGATCCTGATTTGGCAGGGATTTTGGAGGAACTGCATGCCACTAGGGCAACTGCTAAAGAGAGGCAAAAGAACTTG GAGAAGAGTATAAGAGAAGAGGCTCGCTGGCTGAAGGATGGGGCTGGTGGAGATGGGGATAGGGGTAGGAGAGGACTTGTTGATAGAGATGCTGAAAGTG GTTGGTTGAAAGGCCAGCCTCAGTTGCTTGACTTGGACAGCATTGCTTTTGAACAGGGTGCTGGCCTTTTGATGGCAAACAAAAAGTGTGATCTTCCTGT TGGTTCTTTTAAACATCAGAAAAAGGGTTATGAAGAAGTTCATGTACCAGCATTGAAGCCACGGGCAATACCTCCTAATGAGAGGTTTGTAAAGATATCA GAAATGCCAGACTGGGCTCAACCAGCTTTCGAAGGGATGCAACAGTTGAACAGGGTGCAGAGTAAAGTCTATGAGACCGCCCTTTTCAAGGCAGATAATA TACTCCTGAGTGCTCCAACTGGAGCAGGAAAAACCAATGTTGCAGTGCTCACTATACTTCAGCAAATTGCCTTGAACAGGAATCTGGACGGTTCATTCAA CAATAACAATTATAAGATAGTTTATGTGGCTCCAATGAAAGCCCTTGTGGCTGAAGTTGTGGGTAATTTGTCCAATCGGCTGCAGGAGTATGGTGTCCAG GTGAAGGAACTAAGTGGAGATCAAACAATGACCCGCCAACAAATTGAGGAAACTCAGATAATTGTGACAACCCCTGAAAAGTGGGACATTATCACCAGAA AGTCTGGTGATCGCACCTATACTCAACTTGTGAAACTCCTTATTATTGATGAGATTCACCTTCTTCATGATAATAGAGGACCTGTGCTTGAGAGTATTGT TGCAAGAACCGTTAGGCAAATTGAAACAACAAAGGAAAATATCCGGTTAGTGGGGCTGTCAGCTACACTCCCTAATTTTGAGGATGTGGCTTTGTTTTTA CGGGTTGATCTGGAAAAGGGGCTCTTCCATTTTGACAATAGCTACAGGCCAGTTCCTCTTTCTCAACAGTATATTGGAATCAATATAAATAAGCCACTGC AGAGGTTTCAGTTGATGAATGATATCTGTCACGAGAAGGTAATGGATGTAGCAGGAAAGCATCAAGTTCTCATCTTTGTCCACTCAAGGAAGGAAACAGC CAAAACAGCTCGAGCAATAAGGGACACTGCACTTGCTAACGATACTCTAAGTAGATTCTTGAGAGAGGATAGTGCAAGTCGTGAGATTCTCCAAACTGAT TCAGAATTGGTGAAAAGCAATGATCTCAAAGATCTTCTGCCCTATGGATTTGCTATTCATCATGCTGGGATGACAAGAGGTGATCGTCATCTTGTTGAGG AGCGCTTTAGGGATAGGCACGTGCAAGTACTGGTTTCTACTGCAACTCTAGCTTGGGGTGTTAACTTGCCTGCTCACACTGTGATTATCAAAGGGACTCA GATTTACAATCCAGAAGAAGGAGCATGGACTGAACTAAGTCCACTGGATGTTATGCAGATGTTGGGTCGTGCTGGCAGGCCTCAGTATGATTCATACGGG GAAGGGATTATCATCACAGGCCATAGTGAGCTGCAGTACTACCTTTCCTTGATGAATCAACAACTTCCCATTGAAAGTCAGTTCGTATCCAAGCTGGCTG ATCAGTTGAATGCAGAAATTGTTCTAGGATCAGTTCAAAATGCCAGGGAAGCTTGCCACTGGCTCGAGTATACTTACTTGTATGTCCGGATGATGCGAAA CCCTACACTTTATGGCTTAGCACCAGATGTTCTTACTAGGGATATCACATTGGAGGAGAGGAGGGCGGATCTGATACATTCTGCTGCTACTATCTTGGAC AAAAATAATTTGGTCAAGTATGACAGGAAGAGTGGATATTTCCAGGTGACTGACTTGGGTCGAATTGCGAGCTACTACTATATTACTCATGGGACAATGT CCACATATAATGAGCATTTGAAGCCAACAATGGGAGATATTGAGCTGTGTCATCTATTCTCACTAAGTGAAGAATTTAAATATGTTACAGTTAGACAAGA TGAGAAGATGGAACTGGCAAAGCTTTTGGACTGTGTTCCAATTCCTATCAAGGAAAGCCTAGAGGAGCCTAGTGCCAAAATTAATGTTTTGCTGCAAGCA TATATTTCTCAGCTAAAGCTCGAAGGGCTTTCATTGACATCTGACATGGTGTTCATAACTCAGAGTGCTGGTCGTCTTATGCGAGCTCTCTTTGAGATTG TCTTGAAAAGAGGATGGGCCCGGTTAGCTGAGAAGGCTTTGAACTTGTGTAAAATGATTAATAAGAGAATGTGGAGTGTCCAGACTCCCCTTCGCCAATT CCATGGGATCCTTAATGAAACTCTGATGATGTTGGAGAAGAAAGATTTGTCATGGGAAAGGTACTATGACCTTAAACCACAGGAGATTGGTGAGCTCATC CGTTTTCCCAAGATGGGCAAAACACTGCACAAGTTCATCCACCAATTCCCAAAGTTAAACCTTGCAGCACATGTTCAGCCCATTACTCGCACCGTGTTGA GGGTTGAACTTACAATAACTGCAGACTTTCTATGGGACGAAAACGCTCATGGATATGTGGAACCATTTTGGGTTATCATGGAGGATAATAATGGTGACTC TATTCTTCATCACGAGTACTTTATGCTGAAAAGGCAGTCCGTTGATGAGGAACAGGTTGTGGACCCCACACTGAATTTCACAGTGTTGATCCATGAGCCA TTGCCACCTCAGTATTTCATTCGTGTTGTGTCAGATAAATGGCTTGGTTCACAAACAGTTTTGCCCATCTCTTTAAGGCATCTTATCTTGCCAGAAAAGT ATCCACCTCCTACAGAGTTGTTGGACTTGCAGCCTCTGCCTGTGACTGCGTTGAGAAATCCATCATATGAAGCTCTTTATCAAGATTTTAAGCATTTTAA TCCAGTGCAAACTCAGGTCTTTACTGTTCTTTATAATACAGATGATAATGTCTTGGTTGCTGCACCAACAGCGAGTGGGAAAACTACCTGTGCAGAGTTT GCCATATTGAGGAATCACCAAAAGGGACCAGAGTGTGTAATGCGTGCAGTTTATATCGCTCCTCTTGAAGTAATTGCCAAGGAACGCTATCGTGATTGGG AGAGAAAGTTTGGCCAAGGTCTTGGCATGCGCGTTGTTGAATTAACTGGGGAAACAGCTACAGACTTGAAGCTACTTGAAAGGGGTCAAATAATCATCAG CACTCCTGAGAAATGGGATGCTCTGTCTCGACGATGGAAACAGCGGAAGTATGTCCAGCAAGTTAATCTTTTTATCATTGATGAGCTTCACTTGATTGGG GATCAAGGTGGTCCTGTCTTGGAGGTGATTGTCTCTAGGATGCGATACATTTCTAGTCAGATAGAGAACAAGATACGGATTGTGGCTTTGTCTTCCTCTC TTGCAAATGCCAAGGATCTTGGGGAATGGATAGGAGCTACATCTCATGGCCTTTTCAATTTTCCTCCTGGTGTGCGTCCTGTGCCCCTGGAAATACACAT TCAAGGTGTTGATATTGCCAATTTTGAGGCAAGGATGCAAGCAATGACGAAACCAACATATACTTGTATTGTCAAGCATGCAAAGAATGGTAAGCCAGCT ATTGTCTTTGTTCCCACAAGAAAGCATGTGCAACTCGCTGCTGTAGATCTGATGACATACTCAAGTGTGGATGGTGGAGAGAAGCCAGCTTTTCTGTTAA GGTCTGAAGAATTGGAGCCTTTCATTGGAAAGATCCAGGAAGAAATGTTGAGAGCCACTTTGTACCATGGAGTTGGGTACTTGCATGAGGGCTTGAGCAG CTTGGATCAAGAAGTTGTGTGCCAACTGTTTGAAGCTGGGTGGATTCAGGTTTGTGTCATGAGTAGTTCATTATGCTGGGGGTTGCCTTTGTCAGCACAT TTAGTGGTGGTGATGGGAACTCAATACTATGATGGGCAAGAAGATGCTCGCACGGATTATCCTGTCATAGATCTTCTGCAGATGATGGGTCATGCTAGCC GACCTCTTATAGATAACTCTGGAAAGTGTGTCATCCTTTGCCATGCACCTCGTAAAGAATATTACAAGAAATTCTTACATGAAGCATTTCCCGTGGAAAG TCATTTGCACCATTTCTTACATGATAATTTTAATGCTGAAGTTGTTGCTGGAGTTATTGAGAACAAGCAGGATGCTGTAGATTATCTCACGTGGACATTC ATGTACAGGAGGCTCACTCAGAATCCAAACTACTACAATCTCCAGGGAGTTAGTCACAGGCATCTTTCTGATCACCTCTCAGAGCTTGTTGAGAACACAT TGGCTGACCTAGAGAAGAGTAAATGTGTTGCTATCGAGGATGACATGGACCTTTCTCCTTTGAACCTTGGCATGATAGCATCTTACTATTACATCAGTTA TACTACTATAGAACGTTTTAGCTCCTCTCTGACTCCCAAAACAAAGATGAAGGGTCTTCTGGAAATCCTCTCTTCAGCCTCAGAGTATGTGCAACTGCCA ATACAACCTGGGGAGGAGGAGGTGCTTCGAAGATTAATCAATCATCAGAGGTTTTCGTTTGAAAATCCTAGATATGCTGATCGACATGTGAAGGCTAATG TGTTGCTACAAGCCCATTTCTCTAGGCAATCTGTGGGTGGGAACCTAGCATTGGAACAGCGAGAGGTGCTTCTTTCTGCCAGTAGATTGCTTCAAGCAAT GATTTATGTCATTTCAAGCAATGGCTGGTTGAACTGTGCTCTCCTTGCTATGGAAGTTAGCCAAATGGTGACACAAGGGATGTGGGAGCGAGATTCCATG CTTCTACAGCTTCCACACTTCACAAAGGAGTTGGCTAAGAAATGCCAGGAGAACCCGGGAAAGAGCATTGAGACAGTGTTTGATCTGGTAGAGATGGAAG ATGATGAGAGGCGTGAGCTTTTGCAGTTGTCAGATTCTCAGGTGCTAGATATTGTGAGGTTTTGCAATCAATTTCCCAACATTGATATGTCTTACGAGGT GATGGATGGTGATAATGTGAGGGCAGGAGAAGACATCACTTTGCTTGTCACCCTTGCAAGGGATCTAGAGGGGACAGAGGTGGGACCTGTTGATGCCCCA AGGTATCCTAAACCCAAAGAAGAAGGGTGGTGGCTTGTTGTCGGTGATACCAAGAGCAACCTGTTGCTTGCCATCAAGAGGGTTTCCCTTCAGAGGAAGT CAAAGGTGAAGCTGGAGTTTGCTGCTCCTACAGATGCTGGAAGGATGTCGTACACTCTCTATTTCATGTGTGATTCTTATCTTGGCTGTGACCAGGAATA CAACTTCTCTGTTGATGTCGGTGAAGCTGCAGGCCCAGATGAAGACAGTGAAGGAGAGTAA
AA sequence Show only first row Show all	>Potri.012G097300.1 pacid=42784345 polypeptide=Potri.012G097300.1.p locus=Potri.012G097300 ID=Potri.012G097300.1.v4.1 annot-version=v4.1 MAHLGGGAEAHARFKQYEYRANCSLVHTTDTRQRDTHEPTGEPESLWGRIDPRSFGDRAHRGRPSELDEKINKAKGKKKERDALSEAVRGCQAKRRRLRE ESVLTSTEEGVYHPKTKETRAAYEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNSMFDQFVSIGKLITDYQDGGDGAG VSVANGDDVLNDNVGVAVEFDEDNEDEEGDSDLDMVPQEEEEEEEDDDVVEAGGSGAMQMGGRIDDDEMRGANEGMNLNVQDIDAYWLQRKISQAYEQQI DPQQCQKLAEEVLKLLAEGDDREVETKLLLHLQFDKFSFIKFLLWNRLKIVWSTRLVRSKDQEERKQIEEEMMGSDPDLAGILEELHATRATAKERQKNL EKSIREEARWLKDGAGGDGDRGRRGLVDRDAESGWLKGQPQLLDLDSIAFEQGAGLLMANKKCDLPVGSFKHQKKGYEEVHVPALKPRAIPPNERFVKIS EMPDWAQPAFEGMQQLNRVQSKVYETALFKADNILLSAPTGAGKTNVAVLTILQQIALNRNLDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQ VKELSGDQTMTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKENIRLVGLSATLPNFEDVALFL RVDLEKGLFHFDNSYRPVPLSQQYIGININKPLQRFQLMNDICHEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSRFLREDSASREILQTD SELVKSNDLKDLLPYGFAIHHAGMTRGDRHLVEERFRDRHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEEGAWTELSPLDVMQMLGRAGRPQYDSYG EGIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGSVQNAREACHWLEYTYLYVRMMRNPTLYGLAPDVLTRDITLEERRADLIHSAATILD KNNLVKYDRKSGYFQVTDLGRIASYYYITHGTMSTYNEHLKPTMGDIELCHLFSLSEEFKYVTVRQDEKMELAKLLDCVPIPIKESLEEPSAKINVLLQA YISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWARLAEKALNLCKMINKRMWSVQTPLRQFHGILNETLMMLEKKDLSWERYYDLKPQEIGELI RFPKMGKTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITADFLWDENAHGYVEPFWVIMEDNNGDSILHHEYFMLKRQSVDEEQVVDPTLNFTVLIHEP LPPQYFIRVVSDKWLGSQTVLPISLRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAPTASGKTTCAEF AILRNHQKGPECVMRAVYIAPLEVIAKERYRDWERKFGQGLGMRVVELTGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVNLFIIDELHLIG DQGGPVLEVIVSRMRYISSQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTCIVKHAKNGKPA IVFVPTRKHVQLAAVDLMTYSSVDGGEKPAFLLRSEELEPFIGKIQEEMLRATLYHGVGYLHEGLSSLDQEVVCQLFEAGWIQVCVMSSSLCWGLPLSAH LVVVMGTQYYDGQEDARTDYPVIDLLQMMGHASRPLIDNSGKCVILCHAPRKEYYKKFLHEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTF MYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTLADLEKSKCVAIEDDMDLSPLNLGMIASYYYISYTTIERFSSSLTPKTKMKGLLEILSSASEYVQLP IQPGEEEVLRRLINHQRFSFENPRYADRHVKANVLLQAHFSRQSVGGNLALEQREVLLSASRLLQAMIYVISSNGWLNCALLAMEVSQMVTQGMWERDSM LLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRELLQLSDSQVLDIVRFCNQFPNIDMSYEVMDGDNVRAGEDITLLVTLARDLEGTEVGPVDAP RYPKPKEEGWWLVVGDTKSNLLLAIKRVSLQRKSKVKLEFAAPTDAGRMSYTLYFMCDSYLGCDQEYNFSVDVGEAAGPDEDSEGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.012G097300 [exp]	0	1
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	1.41	0.7350
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	3.00	0.6892
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	5.47	0.6781
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.005G151500 [exp]	10.29	0.6954
AT1G27461			unknown protein		Potri.014G015300 [exp]	16.15	0.6580
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	30.78	0.6857
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	34.35	0.6388
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	34.89	0.6691
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	36.00	0.6392
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.008G027000 [exp]	38.06	0.6383

Compare expression of checked genes

Potri.012G097300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.