Plant FIBer expression Database

Potri.012G097500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50410 232 / 3e-76 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G096000
[exp]
381 / 2e-135 AT5G50410 239 / 2e-79 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007607
[exp]
230 / 2e-74 AT5G50410 231 / 2e-74 unknown protein
Lus10017246
[exp]
192 / 1e-57 AT5G50410 186 / 7e-55 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G097500.1 pacid=42784083 polypeptide=Potri.012G097500.1.p locus=Potri.012G097500 ID=Potri.012G097500.1.v4.1 annot-version=v4.1
ATGTCGAAATCAATGGAACAAACCCTAGAAGGGGAAGACGACGACAACAACAACAACAGAGGAAGCGGATCAAACCCTAATCAATCACAAGAATGGGAAA
CAATGGCTCGACTTTGGCTCAGTGCGTTTCCTGGAGTGAAAGCAGTGAGTGGGACCGAGGTGGAGTCATGGATCGATTCTAATTACTCATCTTTACCTTC
TGATTTACAATCCATGCCTCGTTCAGACCTCGTTGATCGCTTGCTTTCTATTCAAAATTACATGAGGCTCCCCGATCACAGTCAGCAGGTGCCGGAGACG
AATCAGGTTGATGTTCCACATGCTCGATTTCAACGCACTGATCAATGGCTGCCGGTTTATTCCTGGCTGGAATCTTTGGATAAAGATGAGGTGGTCAAGT
CCAAAGATATTTCTGATTGGCTGGCTGAGAATCCAGGGATTAGAGAACAGCTGTTCTCTAGACATTCTAGATATCATTTGATGCACTACATTAAAAAGTG
CCACGTAAAGATACTCAAGAGGAGGGAAAGGAAGAAGGGTGTGCAGCCGACTGACAATCCCGGTTCTCCGAAAGTTCAGAAGAATGTGGAGGTGAAAGAA
CTGACACCAGTTCCAATGTTCAATCCTTTGAACAATATACCTAAAGACAGTGAATTGTATGTGGCAAAACGAAATGAGGCTCTTCAGAAATATGAGATTT
TGTTGGAGTTGGAGAAGAAGCTCTCCCCTCACTTTTCAAAACGTGAGGCTGTAAACCACTGA
AA sequence
>Potri.012G097500.1 pacid=42784083 polypeptide=Potri.012G097500.1.p locus=Potri.012G097500 ID=Potri.012G097500.1.v4.1 annot-version=v4.1
MSKSMEQTLEGEDDDNNNNRGSGSNPNQSQEWETMARLWLSAFPGVKAVSGTEVESWIDSNYSSLPSDLQSMPRSDLVDRLLSIQNYMRLPDHSQQVPET
NQVDVPHARFQRTDQWLPVYSWLESLDKDEVVKSKDISDWLAENPGIREQLFSRHSRYHLMHYIKKCHVKILKRRERKKGVQPTDNPGSPKVQKNVEVKE
LTPVPMFNPLNNIPKDSELYVAKRNEALQKYEILLELEKKLSPHFSKREAVNH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50410 unknown protein Potri.012G097500
[exp]
0 1
AT5G19830 Peptidyl-tRNA hydrolase family... Potri.001G005000
[exp]
1.73 0.8647
AT2G15695 Protein of unknown function DU... Potri.009G103500
[exp]
6.00 0.8349
AT3G17830 Molecular chaperone Hsp40/DnaJ... Potri.015G035300
[exp]
6.32 0.8632
AT1G30910 Molybdenum cofactor sulfurase ... Potri.003G154900
[exp]
8.06 0.8620
AT1G27840 ATCSA-1 Transducin/WD40 repeat-like su... Potri.014G016100
[exp]
9.16 0.8326
AT1G72650 MYB TRFL6 TRF-like 6 (.1.2) Potri.003G063700
[exp]
10.19 0.8324
AT3G17980 AtC2 Arabidopsis thaliana C2 domain... Potri.004G089500
[exp]
10.24 0.8264
AT4G39870 TLD-domain containing nucleola... Potri.005G075800
[exp]
10.24 0.8025
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.005G130800
[exp]
10.39 0.8550
AT5G12240 unknown protein Potri.009G069000
[exp]
11.83 0.8464

Potri.012G097500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.