Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 437 / 1e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 423 / 6e-149 HCP-like superfamily protein with MYND-type zinc finger (.1) AT1G74875 51 / 3e-07 unknown protein AT1G17110 43 / 0.0002 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 42 / 0.0006 UBP19 ubiquitin-specific protease 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096200 [exp] 593 / 0 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.001G056800 [exp] 465 / 1e-164 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 454 / 5e-160 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.013G008800 [exp] 64 / 1e-11 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 59 / 8e-10 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.018G009500 [exp] 42 / 0.0004 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 42 / 0.0004 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006418 [exp] 454 / 2e-160 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10015784 [exp] 432 / 2e-151 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 283 / 1e-93 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 260 / 4e-85 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037978 [exp] 56 / 1e-08 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 54 / 6e-08 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10022147 [exp] 48 / 7e-07 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10026918 [exp] 42 / 0.0005 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.012G097600.1 pacid=42782607 polypeptide=Potri.012G097600.1.p locus=Potri.012G097600 ID=Potri.012G097600.1.v4.1 annot-version=v4.1 ATGGCTCAAAGGAAAAGATTACGTACAATCACTGAGAAACCTGATTACTTTGATCAGTTACCAGACGATCTTGTTCTAAATATTCTTTGCAAGCTTAGTT CTTCTGCCTCTTGCCCCTCCGATTTTATTAACGTTCTCATCACATGTAAAACATTAAAGCGGTTGGCCACCAATCCTTTGGTTTTGTCGAAAGCTGGAGC TAAAATGTTTGCCATGAAAGCAGAACGTTGGTCGGATTCGGCTCACCAGTTTTTAAAACAGTGTGTTAAAGCAGGCAACAGTGAAGCCTCGTACACGCTA GGAATGATCCGATTCTATTGCTTACAAAACCGAGGAAGTGGAGCGTCCTTGATGGCAAAAGCCGCTATCAAGTCGCATGCCCTGGCCATGTATTCTCTTG CTGTCATACAATTCAACGGCAGTGGAGGCTCAAAAACTGATAAAAATCTCCGAGCGGGGGTGGCTTTATGTGCTCGAGCTTCCGTTTTGGGTCATGTCGA TGCGCTTCGTGAGCTCGGCCATTGCCTTCAAGATGGTTACGGAGTCCCTCAAAATATCGTCGAGGGACGCCGTTTATTAGTCCAGGCTAATGCAAAGGAG CTCGCATTATCCTTACGTTCCATGATGACATGGAAACCCCAGCAGCAGCAACAAAATCTTCATCATGCTTGTACGGTGATGGGTACCGCTATCACGGGAT GTCCATTACTGAGTGATTTTGGATGTAACTTACTGGCTCGAGAGGTGCACCCAGCGAGCAAGTTCTTAAGGGAGTGGTTCGAGTCGAGGAGTGGGGCGTT GGATGATGGCTTGAGACTATGCTCGCATAGTGGATGTGGGAGGCCCGAGACAAGGACACATGAGTTTCGCAGGTGTTCGGTTTGTGGTACGGTAAATTAT TGTTCGAGAGGATGCCAAGCACTTGATTGGAAAGCGAGGCATAAAGTGGAATGTGTCCCGATGGATCAATGGCATGGAGTATTAGAAGATGGTGGAGATA TGGTGGAAATGGAGGAAGGTGATGAGTATGTGGATATTGTTGAATGA
AA sequence Show only first row Show all	>Potri.012G097600.1 pacid=42782607 polypeptide=Potri.012G097600.1.p locus=Potri.012G097600 ID=Potri.012G097600.1.v4.1 annot-version=v4.1 MAQRKRLRTITEKPDYFDQLPDDLVLNILCKLSSSASCPSDFINVLITCKTLKRLATNPLVLSKAGAKMFAMKAERWSDSAHQFLKQCVKAGNSEASYTL GMIRFYCLQNRGSGASLMAKAAIKSHALAMYSLAVIQFNGSGGSKTDKNLRAGVALCARASVLGHVDALRELGHCLQDGYGVPQNIVEGRRLLVQANAKE LALSLRSMMTWKPQQQQQNLHHACTVMGTAITGCPLLSDFGCNLLAREVHPASKFLREWFESRSGALDDGLRLCSHSGCGRPETRTHEFRRCSVCGTVNY CSRGCQALDWKARHKVECVPMDQWHGVLEDGGDMVEMEEGDEYVDIVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67340			HCP-like superfamily protein w...		Potri.012G097600 [exp]	0	1
AT5G54585			unknown protein		Potri.001G409600 [exp]	4.00	0.6330
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.013G057100 [exp]	5.29	0.5388
AT2G40116			Phosphoinositide-specific phos...		Potri.008G068300 [exp]	6.00	0.6319
AT3G11690			unknown protein		Potri.006G200100 [exp]	11.00	0.6746
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.001G307800 [exp]	20.88	0.6307	N21L9
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	24.00	0.6073
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	30.98	0.5944
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	32.24	0.5903
					Potri.005G193800 [exp]	32.86	0.6175
AT1G63220			Calcium-dependent lipid-bindin...		Potri.002G155600 [exp]	50.55	0.5802

Compare expression of checked genes

Potri.012G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.