Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48550 143 / 6e-44 unknown protein AT2G01940 71 / 1e-14 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G68130 59 / 3e-10 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 57 / 5e-10 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096500 [exp] 247 / 1e-84 AT3G48550 145 / 4e-45 unknown protein Potri.010G101200 [exp] 82 / 2e-18 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.008G140400 [exp] 81 / 4e-18 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.015G033100 [exp] 78 / 5e-17 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 72 / 5e-15 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031883 [exp] 77 / 2e-18 AT2G01940 92 / 1e-23 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10031314 [exp] 80 / 9e-18 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10042288 [exp] 54 / 6e-09 AT2G01940 112 / 4e-29 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10026369 [exp] 51 / 8e-08 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G097901.2 pacid=42783503 polypeptide=Potri.012G097901.2.p locus=Potri.012G097901 ID=Potri.012G097901.2.v4.1 annot-version=v4.1 ATGGAAGAGGGCTATCAAAAGGAGCTTCAGCTTCTCCCCTCACAGCTTTCCATAGCCGCTTCCTCCTCCTCATCTTCTCTAATGTCATCGCGGCCGATGG ATTCTTCATTGAGGTACAGGCCAGTGGCGTCTGATCATCATCAACATCATCAGTTTGGAGGGCCATCACTAGACTTGCAATTATCGATAAGTGTTGGGCC AATCCAGGGACCATCTAACTGTGTTTTAACAGGTCCCATTTGTGATTTCAGCGATGCGAAAACGGATACGAGCTGCGTTGAAACCTTGAAATGGCAGGCT GCTGAGCAGATTAAATTGGCAGCTATTGAAAAGGCTTATGCAGAGCGAGTAAGGGAGCTTACAAGGAGGGAGATGGAGTTGGCGCAGTCAGAGTTTGCAA AGGCAAGGCATATGTGGCAGAGGGCTAGAGAGGAAGTGGAAAAGGCAGAGAGTATGAAAGAGAAAGCTACAAGGAAGATAGATTCTACGTGCATGGAGAT CACCTGCCAGTCTTGCAGGCAAAGGCTCAAACCCTGA
AA sequence Show only first row Show all	>Potri.012G097901.2 pacid=42783503 polypeptide=Potri.012G097901.2.p locus=Potri.012G097901 ID=Potri.012G097901.2.v4.1 annot-version=v4.1 MEEGYQKELQLLPSQLSIAASSSSSSLMSSRPMDSSLRYRPVASDHHQHHQFGGPSLDLQLSISVGPIQGPSNCVLTGPICDFSDAKTDTSCVETLKWQA AEQIKLAAIEKAYAERVRELTRREMELAQSEFAKARHMWQRAREEVEKAESMKEKATRKIDSTCMEITCQSCRQRLKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48550			unknown protein		Potri.012G097901 [exp]	0	1
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.019G091900 [exp]	1.00	0.8920
AT4G33800			unknown protein		Potri.001G292100 [exp]	5.65	0.8787
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Potri.003G167700 [exp]	8.00	0.8438
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	9.16	0.8671
AT5G45280			Pectinacetylesterase family pr...		Potri.004G233900 [exp]	9.64	0.8067
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	10.24	0.8196
AT3G20390			endoribonuclease L-PSP family ...		Potri.011G139600 [exp]	12.00	0.8123
AT5G42110			unknown protein		Potri.011G151900 [exp]	12.32	0.8203
					Potri.002G252400 [exp]	13.07	0.8747
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	14.69	0.7985

Compare expression of checked genes

Potri.012G097901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.