Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24900 319 / 3e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096700 [exp] 242 / 1e-76 AT4G24900 111 / 2e-27 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022913 [exp] 338 / 2e-112 AT4G24900 331 / 4e-110 unknown protein Lus10024906 [exp] 77 / 5e-16 AT4G24900 119 / 6e-32 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14968 [poplar] [flax] CCDC84 Coiled coil protein 84
Representative CDS sequence Show only first row Show all	>Potri.012G098000.1 pacid=42783372 polypeptide=Potri.012G098050.1.p locus=Potri.012G098000 ID=Potri.012G098000.1.v4.1 annot-version=v4.1 ATGAACCAGAAGATGAAGATTAACAATGAGAAGAAGAAAAACATGGAGTTCGAATTCTGCAAAGCATGTAATTTGAATCACGATCAAGGCCAAAACCACA AGTACTTTCCAAACCACAAAAAATCACTCTCTAATTTCCTCTCTCGTTTCCAAACCAAACTCGCCGACATTCGCTTCTTTCTCAAGAACCCTACCATTCT CCGCCCTGAACTCGCCTCTCGCAATCGCATCTGGTGCATCTTCTGCGATTTCGATATCCACGAAACTGGCAGCTCCTTCGCATGTGCTAAGGCGATTAGT CACTTGGCGAGTGAGGAGCATTTGAAGAAATTGAAGCACTTTATGTGGAAATACGGTGGTGGAATGGATCGTGTCGATACTTTTCGGATTTCGGAAGCTG ATGCAGCTAAGTGGGAGAAGAAGTGTGAAGCTTTGAGGAATGATGCGTCATCATATAGTGATGGATCACGAGGGATGCAAGTCAGACCTTCAAATGATAT CCGCGATGAACTCAGCCATGAAAATATAAATAGCTTTGAGAATAATAGTTTGGATAATGTTAATTTGAATATTTCAAATGGTGTTATGCCTTTACAGTAT TATACGAATGAGTATCAGATATCCAATTCAGGATTCTCTGCAGCTAGGAATGCTGGACCATCCATGTATGGTGCTGTATCCACTTTGCCTGTGGGCGCAC GTTCTGCTACAAGTTTATGCAATTCAAACGATACAACGGGTAATTGGAATAGCCAACATTCTGTCCCTTATAACAGTATAAACTGTGCATCTAATCCTGT AAATGGAGAGCTGTGCCAGGTTTATCAGGATGAGAGAATTGGACATGGAGTGAGCAGTTTACAGGATTCGCAGAATATCCCTCAAGTTCCTGCTATTGCT CCACAATTGGCTGGAGGCTCTCAAGTGCCTGCCTTGACCCCACAAATGGCTGGAGGAAATGTGCATACTGGAGCTCCTCCACCATGGTTTGAAGGAACTG ATACAAAACAGCTAAATTTTCAACTAACACTTTCTAATAAATCCATGTCGAGTTCAAATAAATCTGGTAAATCATATAAATTGAACCCAAAAAGGGTAGG AGCTGCTTGGGCAGAAAGGAGAAAGATTGAGATGGAGATGGAGAAGAGAGGAGAGGCTGTCAAGAGTGATTACAATGCTAACTGGCTTCCCAATTTTGGT AGAGTTTGGCAGTCTGGGAGCCGAAAGGAGTCTAGAAAAGAATTTGAGAAGGAGAAAAAAAAATTATCCAGTGTTAAGATTGATACTGAGATGCCAATTA TGATACAGCCATATATCAGCAAACGGATGAGGAAGGATGCAGGTAAATGA
AA sequence Show only first row Show all	>Potri.012G098000.1 pacid=42783372 polypeptide=Potri.012G098050.1.p locus=Potri.012G098000 ID=Potri.012G098000.1.v4.1 annot-version=v4.1 MNQKMKINNEKKKNMEFEFCKACNLNHDQGQNHKYFPNHKKSLSNFLSRFQTKLADIRFFLKNPTILRPELASRNRIWCIFCDFDIHETGSSFACAKAIS HLASEEHLKKLKHFMWKYGGGMDRVDTFRISEADAAKWEKKCEALRNDASSYSDGSRGMQVRPSNDIRDELSHENINSFENNSLDNVNLNISNGVMPLQY YTNEYQISNSGFSAARNAGPSMYGAVSTLPVGARSATSLCNSNDTTGNWNSQHSVPYNSINCASNPVNGELCQVYQDERIGHGVSSLQDSQNIPQVPAIA PQLAGGSQVPALTPQMAGGNVHTGAPPPWFEGTDTKQLNFQLTLSNKSMSSSNKSGKSYKLNPKRVGAAWAERRKIEMEMEKRGEAVKSDYNANWLPNFG RVWQSGSRKESRKEFEKEKKKLSSVKIDTEMPIMIQPYISKRMRKDAGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24900			unknown protein		Potri.012G098000 [exp]	0	1
AT4G36580			AAA-type ATPase family protein...		Potri.005G122300 [exp]	2.64	0.8178
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	3.46	0.8498
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	4.00	0.8622
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	5.65	0.8422
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	5.65	0.8498
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.015G079400 [exp]	6.00	0.8249
AT1G77310			unknown protein		Potri.002G078800 [exp]	6.70	0.8169
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	7.74	0.7982
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	9.48	0.8311
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	10.09	0.7821

Compare expression of checked genes

Potri.012G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.