Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 1052 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 174 / 1e-46 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 92 / 2e-19 PDC3 pyruvate decarboxylase-3 (.1) AT5G01320 87 / 2e-17 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT4G33070 84 / 8e-17 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 75 / 7e-14 PDC2 pyruvate decarboxylase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097200 [exp] 1175 / 0 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 163 / 8e-43 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 78 / 1e-14 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.016G120100 [exp] 77 / 1e-14 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 74 / 2e-13 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 72 / 9e-13 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 71 / 1e-12 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.010G135500 [exp] 53 / 7e-07 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016751 [exp] 1075 / 0 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 980 / 0 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 813 / 0 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 723 / 0 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 570 / 0 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 320 / 2e-105 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 260 / 2e-82 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 228 / 1e-71 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 148 / 1e-37 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 144 / 4e-36 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [poplar] [flax] FAD_DHS PF00205 [poplar] [flax] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain CL0254 [poplar] [flax] THDP-binding PF02775 [poplar] [flax] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [poplar] [flax] THDP-binding PF02776 [poplar] [flax] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G098300.1 pacid=42782606 polypeptide=Potri.012G098300.1.p locus=Potri.012G098300 ID=Potri.012G098300.1.v4.1 annot-version=v4.1 ATGTCCAATATGGCGGCGGTAGCAGCAGCCCCCTCAACCTCCACTGCACCCATCTACAGACCCCCTTCCCCTTCCAAAGCCCCATTACCCATTTCCACAC TCACACTCACCCTCCCTTCAACCTTTAACCACACAAAAACCCGCTCTCTCCACATCTCCAACTCCCTCTCCAAACCCATTTCTTCCACCGCAACAACTTC CTCCCCGACAACCGAGAAATTCTCATTTCCCAGATTTGCCCCTGATGAACCCCGAAAAGGCGCTGACATCCTCGTAGAAGCTCTCGAACGCGAAGGTGTA ACTGATGTCTTCGCTTACCCTGGGGGGGCCTCCTTGGAGATTCACCAAGCTCTCACAAGATCTAATAAAATCCGAAATGTCTTACCGCGCCACGAGCAAG GAGGTGTCTTCGCTGCTGAAGGCTACGCGCGTGCTTCAGGCTTGCCTGGCGTTTGTATTGCAACGTCAGGTCCTGGCGCCACGAATCTTGTGAGTGGATT GGCTGACGCGCTGCTTGATAGCGTCCCAATAGTGGCCATTACTGGTCAGGTTCCGCGGCGAATGATAGGCACTGATGCGTTTCAAGAAACACCAATTGTT GAGGTAACAAGGTCCATAACCAAACATAATTATTTGGTTCTTGATGTTGATGATATTCCTAGGATTATTAAGGAAGCTTTCTTTTTGGCTTCCTCGGGCA GGCCTGGCCCTGTTTTGATTGATATTCCAAAGGATATACAGCAGCAATTGGCTGTTCCTAATTGGGATGTGCCTATGAAGTTGCCTGGTTACCTGTCGAG GTTGCCAAGGAATCCGAATGAGTTGCATTTAGAGCAGATCGTGAGATTGATTTCGGAGAGTAAGAAGCCAGTTTTGTATGTGGGTGGAGGGTGTTTGAAT TCGAGTGAGGAGTTGAGGAGGTTTGTTGAGTTGACGGGGATTCCTGTCGCGAGTACTTTGATGGGTCTAGGTGCCTTCCCTGTAGGGGATGAGCTGTCTT TGCAAATGCTTGGTATGCATGGAACAGTGTATGCGAATTATGCTGTGGATAAGAGTGATTTGCTGCTTGCTTTTGGTGTGAGGTTTGATGATCGTGTGAC AGGAAAGCTTGAGGCTTTTGCAAGTAGGGCAAAGATTGTGCATATTGATATTGATTCGGCTGAGATTGGGAAGAACAAGCAGCCTCATGTGTCGGTTTGT GGGGATGTCAAGGTGGCTTTACAAAGGATCAACAAGATTTTGGAGAGCAGAGGTGCTAGAGGGAAAATGGACTTTAGGGCATGGAGAGAGGAGTTGAATG AGCAGAAAGTGAAGTATCCATTGAGCTTTAAGACTTTTGGAGAAGCAATTCCTCCTCAGTATGCGATTCAGGTTCTTGATGAGTTGACTGATGGGAATGC GATTATAAGTACTGGGGTTGGGCAGCATCAAATGTGGGCTGCTCAGTTTTACAAGTATAAGAGACCAAGGCAGTGGTTGACATCAGGGGGGTTGGGGGCG ATGGGTTTTGGATTGCCTGCTGCTATTGGAGCTGCTGTTGCGAATCCTGATTCCATTGTTGTGGACATTGATGGTGATGGAAGCTTCATCATGAATATCC AAGAGTTAGCCACTATTCGTGTGGAGAATCTCCCTGTCAAGATAATGCTTCTGAACAATCAGCATTTGGGCATGGTGGTCCAGTGGGAGGATCGATTCTA CAAAGCTAACCGGGCTCACACATATTTGGGTAATCCATCGAACGAGTCTGAGATTTTTCCCAATATGTTGAAGTTTGCAGAAGCTTGTGGAATACCTGCT GCCCGCATCACGAGAAAGGATGATCTTAGAGCAGCAATTCAAAAAATGTTGAACACTCCCGGGCCATACTTATTGGATGTGATTGTGCCCCACCAAGAAC ATGTCTTGCCTATGATCCCAAGTGGAGGGGCTTTTAAAGATGTGATAACTGAGGGTGATGGAAGAACGAAGTACTGA
AA sequence Show only first row Show all	>Potri.012G098300.1 pacid=42782606 polypeptide=Potri.012G098300.1.p locus=Potri.012G098300 ID=Potri.012G098300.1.v4.1 annot-version=v4.1 MSNMAAVAAAPSTSTAPIYRPPSPSKAPLPISTLTLTLPSTFNHTKTRSLHISNSLSKPISSTATTSSPTTEKFSFPRFAPDEPRKGADILVEALEREGV TDVFAYPGGASLEIHQALTRSNKIRNVLPRHEQGGVFAAEGYARASGLPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIV EVTRSITKHNYLVLDVDDIPRIIKEAFFLASSGRPGPVLIDIPKDIQQQLAVPNWDVPMKLPGYLSRLPRNPNELHLEQIVRLISESKKPVLYVGGGCLN SSEELRRFVELTGIPVASTLMGLGAFPVGDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVC GDVKVALQRINKILESRGARGKMDFRAWREELNEQKVKYPLSFKTFGEAIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGA MGFGLPAAIGAAVANPDSIVVDIDGDGSFIMNIQELATIRVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNESEIFPNMLKFAEACGIPA ARITRKDDLRAAIQKMLNTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Potri.012G098300 [exp]	0	1
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Potri.019G057200 [exp]	2.00	0.9403
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Potri.010G232600 [exp]	5.47	0.9290
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	15.13	0.9454
AT4G13220			unknown protein		Potri.002G251800 [exp]	19.39	0.9415
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Potri.002G254100 [exp]	22.62	0.9354	PtrcGrx_S12
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Potri.005G189600 [exp]	23.47	0.9345
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	25.27	0.9408
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	34.05	0.9397
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	39.86	0.9392
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	40.02	0.9397

Compare expression of checked genes

Potri.012G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.