Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 282 / 6e-84 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 250 / 1e-72 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 242 / 2e-70 Domain of unknown function (DUF3444) (.1) AT2G05230 237 / 2e-67 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 237 / 2e-67 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 226 / 4e-66 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G50115 224 / 5e-65 unknown protein AT4G19570 193 / 5e-53 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 167 / 4e-47 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 164 / 3e-45 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097500 [exp] 1198 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 669 / 0 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 650 / 0 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 621 / 0 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 602 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 278 / 1e-82 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 275 / 2e-81 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 170 / 1e-43 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 169 / 3e-43 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008983 [exp] 551 / 0 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 543 / 0 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 326 / 5e-101 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 322 / 2e-99 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 268 / 3e-78 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 263 / 2e-76 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 206 / 3e-58 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 204 / 3e-58 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 171 / 3e-45 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 168 / 3e-44 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.012G098800.1 pacid=42784390 polypeptide=Potri.012G098800.1.p locus=Potri.012G098800 ID=Potri.012G098800.1.v4.1 annot-version=v4.1 ATGGAATTTAATAAAGAGGAGGCATCTAGAGTCAAAGAGATTGCAGAGAAGAAGTTTGCAGAGAGGGACATTGCTGGGGCAAGAAGATTTGCAGTGAAGG CTCAAAACTTGTATCCTGCACTTGATGGTCTTCCTCGACTTTTAGCAGCTCTTGATGTGTACATGGCTGCTGATAACAGAACAAATGGAGATGTAGACTG GTACAGAGTCCTTGATGTTGAATCGTCAGCAGATGATGACACAATCCGGAGACATTACAGGAAACTGGCTCTCATTCTGCATCCTGATAAAAATAAAGCA ACAGGCGCTGATGGGGCATTTAAGATTGTATCTGAAGCCTGGAATCTGTTGTCTGATAAAGTGAAGAGAATTTCCTTTGACCAGAAGCGGAATGTAAAAG GTATGGATCAAAAAGTTCCAAATTGGAAATCATCAGTGCCAGCTGGTCAGAATGGTTCCCGTGATCTCTCCAGCAATAAAAATTCTAATGCACGGAGCCA GAAGAGTGCTGTGCACCCGAAGCCTGCTCCTCCTCACCTGTTTTCCAAACCCAATACCTTTTGGACAATCTGTAATGCATGCAAAACACAATTTGAGTAC CTTAGAACTTATCTCAACCACAACCTTCTTTGTCAGAACTGTTGTCAGTCCTTCTTGGCTTTTGAGACGCCACCCCCATCCATGGATGAAAATGGCCCAT CCCGTATGTGGACTTCATACAGCAAAGAAGAGAATTCTACTCGGCATACAAGGGCTGAAAAATCATCTGCATCATCTACGTTTCAGCCAGGGGTATTTTG TAAAGATGGCAGTGTTGGAAGTGCAGCATCAGCATTGTCAGCTGCTCAATCTGAGAAATTGAAAAGAAAGCATGAAGAGGAATTCCTTCACCAGCAAACA AAAACAGTTGCTGGAGGAGCTTCTGGATTCAGCAAGTCTGGTTCCAGTTCTGTACTGAAAGGAGATAGGCTGAAGAAGAGAAGGTGCTCTGATGAGCAAA GGGCAAACAGTAATGGAAAAGAGAAAGCAAAGGAGGTGGCTAACAGAAATGGAGTTGTTGAATCTGGTTCTCGAAAGAGTAGTTTTGAAGCAGGGAGGAG GAACATTTCTGGCAACCATAAAGTTAATAGCACAAAGGAGTTGACACAAGCAGAAACTCGAAAGATGATGATGGAGAAGGCTAAGAGGGACATTTCCAAG AAGGCGAAGGAATGGAGCAGTGTGGCTAATGTTCTAAAGACATCAGGAAAGTATATAAACAAGGAGAGAGGAAAGCAGAAGGCTACTATGAATGGCACAA AAGCTGATGCGAGAGAATGTCCAGAGTATCTAGTTTCCAAGAGCAGAGCTCACTCCACTGACCCTTCACCAATTAATGCTAATGATGATCCAGATACAAA CATCAGTGATCGGCTAGCACTGAGTGTTCTGGATCCAGATTTTCATGATTTTGACAAGGATCGCACCGAGAAATCATTTGGTGATAACCAGGTTTGGGCT GCTTATGATAATGATGATGGGATGCCTAGGTATTATGCCATGATTCACAGTGTGATATCACGGAAACCTTTCAAAATGCGGATTAGTTGGCTTAACACCA AAAGCAACCGTGAATTGGGCCCATTAAACTGGATTGGTTCTGGCTTTTACAAGACCAGTGGAGAATTCTGGATAGGCAAGCATGAAGTCAATAAGTCTCT TAATTCTTTCTCTCACAAGGTGAAGTGGGTGAAGGGCACAAGAGGAGCCATTCAAGTATATCCTGGAAAGGGAGATGTTTGGGCCGTTTATAAAAACTGG TCCCCTAATTGGAATGAGCATACCCCAGATGAAGTCATACACAAATACGACATGGTTGAAGTGCTTGAGGACTACAAAGAGGAGAGAGGAGTTGCTGTCG CCCCTCTTGTTAAAGTTGCTGGTTTCAAGACGGTGTTTCGCCAGCATCCTGATCCAAGCAAAACCAGGACAATTCCAAGGGAAGAGATGTTTAGGTTTTC TCACCAGGTGCCTTCAGTTCTGCTCACAGGTCAAGAAGGTCAATATGCTCCTAAAGGTTGCTGGGAGCTTGATCCTGCATCAACTCCTTTGGAGCTACTT CAGGTATTAACAGAAGTTCAGCTGGATGCAATGATGGAGACTGCTGAAAAAGATAAGGAAAAATATTCATCTGGGGATATGAAAAAATCCAGCGAAGAAG AGTTTGTTGAAAATGTCAACACAGTCAAGGAGAAAGGGGTGGTGGGAGAGGCTGCTAGAGAAGATGTGACTGGTGGTAGGAAGAAAAAGGGTAAGGAAAC AAATGAAGACACGGTAATTGTGTATAAACGGATGCGACGAAAGAACTAG
AA sequence Show only first row Show all	>Potri.012G098800.1 pacid=42784390 polypeptide=Potri.012G098800.1.p locus=Potri.012G098800 ID=Potri.012G098800.1.v4.1 annot-version=v4.1 MEFNKEEASRVKEIAEKKFAERDIAGARRFAVKAQNLYPALDGLPRLLAALDVYMAADNRTNGDVDWYRVLDVESSADDDTIRRHYRKLALILHPDKNKA TGADGAFKIVSEAWNLLSDKVKRISFDQKRNVKGMDQKVPNWKSSVPAGQNGSRDLSSNKNSNARSQKSAVHPKPAPPHLFSKPNTFWTICNACKTQFEY LRTYLNHNLLCQNCCQSFLAFETPPPSMDENGPSRMWTSYSKEENSTRHTRAEKSSASSTFQPGVFCKDGSVGSAASALSAAQSEKLKRKHEEEFLHQQT KTVAGGASGFSKSGSSSVLKGDRLKKRRCSDEQRANSNGKEKAKEVANRNGVVESGSRKSSFEAGRRNISGNHKVNSTKELTQAETRKMMMEKAKRDISK KAKEWSSVANVLKTSGKYINKERGKQKATMNGTKADARECPEYLVSKSRAHSTDPSPINANDDPDTNISDRLALSVLDPDFHDFDKDRTEKSFGDNQVWA AYDNDDGMPRYYAMIHSVISRKPFKMRISWLNTKSNRELGPLNWIGSGFYKTSGEFWIGKHEVNKSLNSFSHKVKWVKGTRGAIQVYPGKGDVWAVYKNW SPNWNEHTPDEVIHKYDMVEVLEDYKEERGVAVAPLVKVAGFKTVFRQHPDPSKTRTIPREEMFRFSHQVPSVLLTGQEGQYAPKGCWELDPASTPLELL QVLTEVQLDAMMETAEKDKEKYSSGDMKKSSEEEFVENVNTVKEKGVVGEAAREDVTGGRKKKGKETNEDTVIVYKRMRRKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G098800 [exp]	0	1
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	8.36	0.8567	CPK20.1
AT5G18230			transcription regulator NOT2/N...		Potri.013G059800 [exp]	8.48	0.8324
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	9.89	0.8617
AT2G44660			ALG6, ALG8 glycosyltransferase...		Potri.014G053200 [exp]	17.60	0.8007
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	23.49	0.8116
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.003G104900 [exp]	23.81	0.8342	EIF2.4
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	24.39	0.8464
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Potri.006G227100 [exp]	27.11	0.7892
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	34.20	0.8221
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	37.52	0.8118

Compare expression of checked genes

Potri.012G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.