Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48610 834 / 0 NPC6 non-specific phospholipase C6 (.1) AT2G26870 619 / 0 NPC2 non-specific phospholipase C2 (.1) AT1G07230 617 / 0 NPC1 non-specific phospholipase C1 (.1) AT3G03520 560 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03530 532 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03540 525 / 0 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097900 [exp] 967 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.009G069900 [exp] 632 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G275500 [exp] 631 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.001G250500 [exp] 606 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 605 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.013G073600 [exp] 584 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035935 [exp] 813 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 813 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10040678 [exp] 616 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10005860 [exp] 607 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10009153 [exp] 581 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10028492 [exp] 573 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10036038 [exp] 355 / 3e-120 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10036039 [exp] 164 / 9e-48 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1) Lus10001208 [exp] 155 / 3e-45 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10001207 [exp] 130 / 4e-36 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF04185 [poplar] [flax] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Potri.012G099300.1 pacid=42782588 polypeptide=Potri.012G099300.1.p locus=Potri.012G099300 ID=Potri.012G099300.1.v4.1 annot-version=v4.1 ATGGGGTGGCTCAGAACTAAACCACCTTCATTTTCCTCCATTTTCTTGCTGTTTCTCACACTTTCATGTGTTTCCACAGCCCAACAACCGAACCCCATCA AGACCATTGTGGTTTTGGTGATGGAAAACAGATCTTTTGATCACATGATTGGTTGGATGAAGAAATCTATTAATCCAGCAATCAATGGTGTTTCTGGGAC AGAATGCAATCCTGTATCAACCAAGAATCCAGGCCCACAATCCATTTGTTTCTCAGATGATGCTGAGTTTGTGGATCCAGATCCTGGACACTCTTTTGAA GCTGTGAAACAACAGGTATTTGGCAATAGCTCTATTCCTTCAATGACTGGTTTTGTTGAACAAGCTCTGACTATATCACAAAACCTCTCTGAAACTGTCA TGGAAGGCTTTAGGCCTGAAGCTGTGCCCGTTTATGCCACACTTGTAAAAGAATTTGCAGTCTTTGATAGGTGGTTTTCTTCAATCCCTGGCCCAACACA ACCCAATAGGCTGTTTGTGTATTCTGCCACTTCTCACGGCTCAACAAGCCATGTTAAGAAGCAATTGGCTACAGGGTACCCTCAAAAGACAATTTTTGAT TCACTTCATGAGAATGGCAAGAGCTTTGGGATTTACTTTCAAAACATTCCAACAACTTTGTTCTATAGGAACATGAGGAAACTGAAGTATATTTTCAAGT TTCATCAGTTTAATTTGAAGTTCAAGAAAGATGCTAGAAATGGGAAGTTGCCAAGCTTAACTGTGATTGAACCAAGCTATTTTGATCTTAAAAGAATGCC TGCAAATGACGATCACCCATCTCATGATGTTGCTAATGGTCAAAAGTTTGTCAAGGAGGTTTATGAGGCATTGAGAGCTAGTCCTCAATGGAATGAGACC CTTTTGGTCATTACTTATGATGAACATGGTGGATTTTATGACCATGTTAAGACTCCTTATGTTAATATTCCTAGCCCAGATGGGAACACTGGCCCTGCCC CGTCTTTCTTCAAGTTTGATAGGCTTGGAGTTCGTGTGCCGACAATTATGGTCTCTCCTTGGATCAAGAAAGGCACTGTGATAAGTGGCCCAAAGGGACC TGCTCCAAACTCAGAGTTTGAGCACTCCTCAATTCCTGCAACTATAAAGAAGATGTTCAACCTGTCCTCTAACTTCTTGACCCACAGAGATGCATGGGCT GGCACATTTGAAGGAGTTGTTGGGGGGGTGACCTCTCCCAGAACTGACTGCCCAGTGACCTTGCCAGATGTAGCACCTTTGCGAAGAACAGAAGCAAAAG AAGATGGTTCACTATCCGAATTCCAGAGTGAGGTAGTTCAACTAGCAGCTGTTCTTAACGGTGACCACTTCTTGAGCAGCTTCCCAGATGAGATGAGCAA GAAAATGAATGTCAAAGAAGCGCATGAATACGTGGAAGGTTCTGTTACAAGGTTCATCAGAGCTAGCAAAGAGGCTATCAATTTAGGAGCAGATGAATCT GCCATTGTAGATATGAGATCATCACTTACTACTAGATCTTCGGTTCACAATTAG
AA sequence Show only first row Show all	>Potri.012G099300.1 pacid=42782588 polypeptide=Potri.012G099300.1.p locus=Potri.012G099300 ID=Potri.012G099300.1.v4.1 annot-version=v4.1 MGWLRTKPPSFSSIFLLFLTLSCVSTAQQPNPIKTIVVLVMENRSFDHMIGWMKKSINPAINGVSGTECNPVSTKNPGPQSICFSDDAEFVDPDPGHSFE AVKQQVFGNSSIPSMTGFVEQALTISQNLSETVMEGFRPEAVPVYATLVKEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVKKQLATGYPQKTIFD SLHENGKSFGIYFQNIPTTLFYRNMRKLKYIFKFHQFNLKFKKDARNGKLPSLTVIEPSYFDLKRMPANDDHPSHDVANGQKFVKEVYEALRASPQWNET LLVITYDEHGGFYDHVKTPYVNIPSPDGNTGPAPSFFKFDRLGVRVPTIMVSPWIKKGTVISGPKGPAPNSEFEHSSIPATIKKMFNLSSNFLTHRDAWA GTFEGVVGGVTSPRTDCPVTLPDVAPLRRTEAKEDGSLSEFQSEVVQLAAVLNGDHFLSSFPDEMSKKMNVKEAHEYVEGSVTRFIRASKEAINLGADES AIVDMRSSLTTRSSVHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48610		NPC6	non-specific phospholipase C6 ...		Potri.012G099300 [exp]	0	1
AT1G75060			unknown protein		Potri.014G041200 [exp]	3.31	0.8268
AT5G67070		RALFL34	ralf-like 34 (.1)		Potri.005G139100 [exp]	7.48	0.8165
AT1G75060			unknown protein		Potri.002G133500 [exp]	8.36	0.7950
AT5G01120			Protein of unknown function (D...		Potri.001G247200 [exp]	8.48	0.7827
AT4G13600			Carbohydrate-binding X8 domain...		Potri.017G055700 [exp]	9.94	0.8038
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	10.24	0.7865
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	14.86	0.7395
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	16.43	0.7460
AT1G69160			unknown protein		Potri.010G154200 [exp]	21.90	0.7705
AT5G19670			Exostosin family protein (.1)		Potri.018G085400 [exp]	22.13	0.7580

Compare expression of checked genes

Potri.012G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.