Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44950 76 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22670 74 / 9e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G62440 72 / 3e-13 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1) AT4G10400 71 / 4e-13 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G28410 71 / 6e-13 F-box/RNI-like superfamily protein (.1) AT5G02930 71 / 8e-13 F-box/RNI-like superfamily protein (.1) AT3G59200 70 / 2e-12 F-box/RNI-like superfamily protein (.1) AT4G03220 70 / 2e-12 Protein with RNI-like/FBD-like domains (.1) AT5G02700 70 / 2e-12 F-box/RNI-like superfamily protein (.1) AT3G62430 69 / 4e-12 Protein with RNI-like/FBD-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146400 [exp] 336 / 5e-109 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 319 / 1e-102 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 182 / 2e-51 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 171 / 1e-46 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.013G146800 [exp] 142 / 3e-36 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 74 / 5e-14 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 71 / 8e-13 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 71 / 1e-12 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.002G132400 [exp] 68 / 5e-12 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 164 / 4e-43 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10037440 [exp] 80 / 2e-15 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10037604 [exp] 71 / 3e-14 AT5G53635 54 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10018543 [exp] 70 / 4e-12 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039271 [exp] 66 / 2e-11 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037289 [exp] 65 / 1e-10 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029952 [exp] 64 / 1e-10 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10029083 [exp] 64 / 2e-10 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10034733 [exp] 62 / 5e-10 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10034290 [exp] 62 / 6e-10 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0022 [poplar] [flax] LRR PF07723 [poplar] [flax] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.012G099400.1 pacid=42783678 polypeptide=Potri.012G099400.1.p locus=Potri.012G099400 ID=Potri.012G099400.1.v4.1 annot-version=v4.1 ATGGAAGAGTCTAAAGGAAGAATTCAGTATGCCTACCAAAGGAAACGATATGTAAGAGATGATGCCACCAATATGGACATGGGAATCAGAGTTGATGCCT CTGATAGGATCTCTCGACTGCCTGATCACGTTCTGCACTACATCCTCTCCTACCTCTCAATTAGAGCTGTGGTTCGTTTCAGTGTCTTGTCCAAAACATG GCACCGAATCTCGACATCGTTCCCTGTTTCTGATTTTTCAGAAGACGTGCTCCTTCTCGGAAAGCGTTATGAAATCCAAGATTGGAAAAATAAATTCATT GACTTTGTGCAAGATTCTTTGCTTGCACAGCACCACCACAACACAAGATCACACAAGTTCAGACTATCTATGGACCTGGATTCTTATGATCCTCAACTTA CTTCTCGTGCTGACCACTTGTTGGAACTGGCTACTAAGTGTGGTGTTTACGAGTTTGATCTCAACTTCCAAAATATATCTCATTATTGTTTGCCGCGAGC CCTCCTCTCTGCTGAAGAAATAACTGTCCTTAGGTTAAACGGAAATTATAAGCTCTCCCTCCCTCGTGATGCCATAAACTGGCCCTCTCTACGTGTTCTC TCTCTGATGAATGTTCGTGTTGATGAGGCCATTCTTCAGAATCTCATCTGCGGTTGCCCTCTGATTGAAAAACTTGCTTTAGTTTATTGTTATGGTGTCA AAAGCATTCGTATTTCAGGATGTATAAAACTCAAGGAGGTTGAGGTGAATGAAGGCGACAGTGTTCTTGAAAGAATGGAGATTCATGTACCAAGTCTTCG AACCTTTTGCTACACAACTGGTTTGGTTAAAAGTTTCTTCCACATCGACATGACTGGTTGCAGGAATCTGGAGGTACTGAAGTTAAAGTTTTATAACATA ACAGAAGTAATTGGACAAGTATTTCAGGATCTTATTGCTCAATTTCCTGCCCTTAAAGTCTTGGCCTTGAATTGTTATGCTACTTCTGTTAGTAGGATCA AAATTTCGAATCCACAGCTCGAGAAGTTACAACTATGGTCATCAGCTCTAACTAAAGTCACCATCACGAGTCCAAGCTTACATTCATTCAAACATTTTAC CTATGGATTTCCATCTGCGTTTTCACTCGACCAATCAAGTCTACAGAAAGCTACCCTTCACGTTCACAAAGGCGCTCTCTATTCTTCTGATTTCCTCCAA CTTAGGGAATATCTTGGAAATTTCAACCAAATCAGACGTCTCACATTGCGCATAAACTATGTAGGCATCAGATTTATCCCTGAAACATTAAATAATATCT CCATTCCTGCTTTGCCTGATATCAAGCACTTGAAGCTTAAAATCTGTCCATCTACTGGAGCTAGTGGGAGTCTTGCTAACCTGAAAGATTACAGAGATAT TGTTGATGGCTTACTTTGGGTTTGCCATCCAGAGACTATACTGCTCATATCAGGCTGGAGTTCTGAAAATTTGTTTATCCAGATTCTTTGCGAAAAACTA ATGCAGGGAGGAGAAAAACAACATTGTTGCACATCTTCTCGTATCAAATGCTGGCGGCATGACTTAAAAGACATTCAAATCGAGCACTTGCAACGAAATG CAGAGGCAAAGGCTTTTACATGTGGTACTTTGTTAGAATCACTACCAAATCTTGCTCGAGGGCAAAAGATTAGATTCATTTTCAATTGGTGA
AA sequence Show only first row Show all	>Potri.012G099400.1 pacid=42783678 polypeptide=Potri.012G099400.1.p locus=Potri.012G099400 ID=Potri.012G099400.1.v4.1 annot-version=v4.1 MEESKGRIQYAYQRKRYVRDDATNMDMGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLLGKRYEIQDWKNKFI DFVQDSLLAQHHHNTRSHKFRLSMDLDSYDPQLTSRADHLLELATKCGVYEFDLNFQNISHYCLPRALLSAEEITVLRLNGNYKLSLPRDAINWPSLRVL SLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEVNEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLEVLKLKFYNI TEVIGQVFQDLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWSSALTKVTITSPSLHSFKHFTYGFPSAFSLDQSSLQKATLHVHKGALYSSDFLQ LREYLGNFNQIRRLTLRINYVGIRFIPETLNNISIPALPDIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVCHPETILLISGWSSENLFIQILCEKL MQGGEKQHCCTSSRIKCWRHDLKDIQIEHLQRNAEAKAFTCGTLLESLPNLARGQKIRFIFNW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44950			F-box/RNI-like/FBD-like domain...		Potri.012G099400 [exp]	0	1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	1.00	0.8627
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G267100 [exp]	2.82	0.8199
AT1G25420			Regulator of Vps4 activity in ...		Potri.010G124100 [exp]	11.95	0.7904
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	13.85	0.8132
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	14.56	0.8124
AT3G57120			Protein kinase superfamily pro...		Potri.008G037501 [exp]	16.70	0.7719
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	17.14	0.7967
					Potri.008G007100 [exp]	17.46	0.8054
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G061100 [exp]	18.65	0.8011
					Potri.007G065250 [exp]	18.76	0.7806

Compare expression of checked genes

Potri.012G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.