Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16210 92 / 1e-20 F-box family protein (.1) AT3G06240 82 / 4e-17 F-box family protein (.1) AT5G49610 77 / 1e-15 F-box family protein (.1) AT4G09190 77 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT1G32420 76 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT4G12560 75 / 2e-14 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G04690 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT5G62660 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT2G40910 71 / 2e-13 F-box and associated interaction domains-containing protein (.1.2) AT5G50220 69 / 6e-13 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012200 [exp] 296 / 7e-98 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.005G114900 [exp] 277 / 7e-90 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.006G170300 [exp] 266 / 7e-86 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.015G013500 [exp] 119 / 4e-30 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 118 / 5e-30 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.018G007900 [exp] 114 / 2e-28 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.010G154500 [exp] 113 / 1e-27 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 109 / 6e-27 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.016G012700 [exp] 110 / 7e-27 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001105 [exp] 109 / 2e-26 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10031020 [exp] 100 / 1e-23 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10007848 [exp] 100 / 2e-23 AT3G10430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) Lus10007847 [exp] 96 / 6e-22 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 94 / 9e-21 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10008870 [exp] 92 / 2e-20 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10039593 [exp] 89 / 2e-20 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027824 [exp] 92 / 3e-20 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10029527 [exp] 91 / 4e-20 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 89 / 2e-19 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.012G099733.1 pacid=42783700 polypeptide=Potri.012G099733.1.p locus=Potri.012G099733 ID=Potri.012G099733.1.v4.1 annot-version=v4.1 ATGGCAACTGAGAATGGATGTCTTTTGCCTGAAGATGTGATCATTGAGATTCTCTCGTTGTTGCCTGTCAAAACTCTATTGCAGTTCAAGTGTGTTTGCA AGTCATGGTATGGAATTATTACTAGTTCCAATTTCATTTCCTTGCACCTGAACAACCACTACAACAACATTAAAAGTGGTCATCTCTTAGCTCACTTTGT TTGCCCCCAGCTGCTTGAGTTGTTCCAAGACGAATCACTCACAGACTTATCACATCAGGGGCTTGATCCACCTATCCGAGGACGTCTTTGTGGTCCTTGC AATGGAATATTTTATGTAGACAGCGAAGATAGTAGTGGTAGTGGTCTTTGGAATCCTGCGACCAAGGAATTCAAGCTTCTACCTGAGAAAATACGTAATA AGTCGAGTCTTCCACTTTATTATGAAGATAGTTATGGATTTGGATTTGATCCGGTAACTAACGACTACAAGGTGGTTGTTATTCGAGAGTCCTATACACG AGAGTATTATCTAGAGAAGTTTCCTTCCTCTCTTGTCATTGTATACACATTACGAACTGATTCTTGGAGATGCTGGGGAAGTCTGGATCAAGGCTACACA TTGCTGGGCAACTATTGTTATACAAATGTGGATGGAGTTTACTATTGGCAGGCAGGCCATGGAGTACATATGAATGTGATTCTTTCCTTTAACATGGCCA CCGATGCGTTCCAAGAAATACAGGAACCAGACTATGACAAGCCAGCATACAGTACTAGACTTATATTATACCACGACTCAATCGCGTTTTCTACTGTCCA CAATGTTGAGAAGTTTCTTGACATTTGGGTGTTGAATGAAGGTTGTTGGATAAGACAATTCAAGAGTCGACCTCTTTTAGAACTTCGGAATCCAGTTGCG CATTGGAAGAACGGTAATGTTATTCTAGACAGTGACAATGACCAACTAATGCTGTATGACACAAACAAGCAAGAACTCAAGGATCTTAGATTTAAAGGAA CTGGTGTCTGCTATGAAATTCTTGTTTACAGGGAAAGCTTGGTTTCAATCAAAGATGGAATTGGGTGCAGGCAACATGAAGAACATTTGCCAGAACACAG CTAA
AA sequence Show only first row Show all	>Potri.012G099733.1 pacid=42783700 polypeptide=Potri.012G099733.1.p locus=Potri.012G099733 ID=Potri.012G099733.1.v4.1 annot-version=v4.1 MATENGCLLPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHLLAHFVCPQLLELFQDESLTDLSHQGLDPPIRGRLCGPC NGIFYVDSEDSSGSGLWNPATKEFKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLVIVYTLRTDSWRCWGSLDQGYT LLGNYCYTNVDGVYYWQAGHGVHMNVILSFNMATDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLLELRNPVA HWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIKDGIGCRQHEEHLPEHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16210			F-box family protein (.1)		Potri.012G099733 [exp]	0	1
AT4G34630			unknown protein		Potri.004G160700 [exp]	7.34	0.7373
AT1G33490			unknown protein		Potri.003G048300 [exp]	8.88	0.7176
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G132400 [exp]	9.89	0.7981
					Potri.006G225133 [exp]	13.07	0.8365
AT1G19010			unknown protein		Potri.017G074300 [exp]	20.78	0.8001
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116700 [exp]	24.79	0.6774
AT1G62305			Core-2/I-branching beta-1,6-N-...		Potri.011G009500 [exp]	26.92	0.6959
					Potri.005G124601 [exp]	34.17	0.7946
AT4G38960	CO		B-box type zinc finger family ...		Potri.004G162600 [exp]	48.47	0.7122
AT5G27930			Protein phosphatase 2C family ...		Potri.005G021900 [exp]	49.56	0.7295

Compare expression of checked genes

Potri.012G099733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.