Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26310 149 / 2e-44 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT4G22950 143 / 1e-42 MADS AGL19 AGAMOUS-like 19 (.1) AT2G45660 142 / 3e-42 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT3G58780 142 / 7e-42 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G69120 141 / 1e-41 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT2G42830 140 / 2e-41 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 140 / 4e-41 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 139 / 8e-41 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT2G03710 137 / 1e-40 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 138 / 3e-40 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G098400 [exp] 281 / 3e-97 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.019G077200 [exp] 146 / 8e-44 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.013G104900 [exp] 145 / 1e-43 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 141 / 7e-42 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G064300 [exp] 140 / 4e-41 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.003G119700 [exp] 138 / 7e-41 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.001G112400 [exp] 138 / 9e-41 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.014G074100 [exp] 138 / 1e-40 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 137 / 6e-40 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005302 [exp] 148 / 6e-44 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 148 / 8e-44 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10017871 [exp] 144 / 1e-43 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10009481 [exp] 142 / 2e-41 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034662 [exp] 140 / 3e-41 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10004638 [exp] 139 / 6e-41 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 140 / 8e-41 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10005080 [exp] 137 / 9e-40 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10039580 [exp] 135 / 7e-39 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10007983 [exp] 134 / 1e-38 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.012G100200.3 pacid=42783141 polypeptide=Potri.012G100200.3.p locus=Potri.012G100200 ID=Potri.012G100200.3.v4.1 annot-version=v4.1 ATGGGGAGAGGGAAAGTGGAGCTAAAAAGAATAGAGAATCCAACTCGTAGGCAAGTAACCTTCTCAAAGAGGAGAAATGGGCTTCTGAAGAAAGCTTTTG AGCTTTCAATTCTGTGTGATGCTGAAGTTTCCCTCATTGTTTTTTCCCCGACCGGAAAGTTTTACCAGTTTGCAAGTCATGAGTCAGTAGTTCTTCTTCC TCCCATGATGGAAAGGACGATCGCTAGATACCGGAGTGAAGCCGGCCTGTCTGGACCAAATGATCACTCACACACTAGATCCTTGGAGTTTTGGAGACGT GAGATTGAAGAGTTACAGAAAACTATAAATGAAACGGAAGCAAAGCTTAGGCACTGTATAGGAGAAGATATAGAAATGTTGGGGATGAAAGAGTTGAAGC AGCTAGAACGACAATTAAAGGCAGGAGTTGAACGTGTCCGCTCTAAGAAGTTACGCATCGCCGCAGAGCACGTCAACTGGTTGAAAGGAAAGCAAAGATC CATTCAAGAGGAGAATGCTTGTCTGAAGAAAAGATTGCATGAGCTGCATGGTGGCAACATAAGCTCGAGGATTTGGGAACCAAATGCACGTAAAGCGATT CAGCTGAGGACGATTGATGATGGATCTCACCTGCATTAA
AA sequence Show only first row Show all	>Potri.012G100200.3 pacid=42783141 polypeptide=Potri.012G100200.3.p locus=Potri.012G100200 ID=Potri.012G100200.3.v4.1 annot-version=v4.1 MGRGKVELKRIENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLIVFSPTGKFYQFASHESVVLLPPMMERTIARYRSEAGLSGPNDHSHTRSLEFWRR EIEELQKTINETEAKLRHCIGEDIEMLGMKELKQLERQLKAGVERVRSKKLRIAAEHVNWLKGKQRSIQEENACLKKRLHELHGGNISSRIWEPNARKAI QLRTIDDGSHLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26310	MADS	CAL1, AGL10, CA...	CAULIFLOWER, AGAMOUS-like 10, ...		Potri.012G100200 [exp]	0	1
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.005G087850 [exp]	3.87	0.8437
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.006G226700 [exp]	9.21	0.7649	Pt-CYP711.1
					Potri.008G045532 [exp]	13.63	0.7622
					Potri.018G119100 [exp]	16.85	0.8492
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	22.36	0.8594
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	23.91	0.7511
AT1G60010			unknown protein		Potri.010G095400 [exp]	26.22	0.8069
					Potri.014G013200 [exp]	30.00	0.7437
AT4G19160			unknown protein		Potri.003G033300 [exp]	30.39	0.7949
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.006G023700 [exp]	30.49	0.8091

Compare expression of checked genes

Potri.012G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.