Plant FIBer expression Database

Potri.012G100400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48680 387 / 8e-138 AtCAL2, GAMMACAL2 ,GAMMA CAL2 gamma carbonic anhydrase-like 2 (.1)
AT5G63510 385 / 5e-137 GAMMACAL1 ,GAMMA CAL1 gamma carbonic anhydrase like 1 (.1.2)
AT5G66510 140 / 2e-40 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2)
AT1G47260 138 / 1e-39 APFI, GAMMACA2 ,GAMMA CA2 gamma carbonic anhydrase 2 (.1)
AT1G19580 137 / 2e-39 GAMMACA1 ,GAMMA CA1 gamma carbonic anhydrase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G098600
[exp]
435 / 8e-157 AT3G48680 374 / 2e-132 gamma carbonic anhydrase-like 2 (.1)
Potri.005G229000
[exp]
142 / 5e-41 AT1G19580 498 / 0.0 gamma carbonic anhydrase 1 (.1.2)
Potri.002G034100
[exp]
141 / 8e-41 AT1G19580 497 / 2e-180 gamma carbonic anhydrase 1 (.1.2)
Potri.005G120800
[exp]
135 / 1e-38 AT1G19580 480 / 7e-174 gamma carbonic anhydrase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031845
[exp]
405 / 7e-145 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1)
Lus10031278
[exp]
394 / 3e-140 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1)
Lus10031847
[exp]
195 / 1e-63 AT3G48680 179 / 7e-58 gamma carbonic anhydrase-like 2 (.1)
Lus10028321
[exp]
139 / 4e-40 AT1G19580 467 / 1e-168 gamma carbonic anhydrase 1 (.1.2)
Lus10041768
[exp]
139 / 7e-40 AT1G19580 459 / 2e-165 gamma carbonic anhydrase 1 (.1.2)
Lus10024267
[exp]
138 / 2e-39 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2)
Lus10001959
[exp]
138 / 2e-39 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2)
PFAM info
Representative CDS sequence
>Potri.012G100400.1 pacid=42784190 polypeptide=Potri.012G100400.1.p locus=Potri.012G100400 ID=Potri.012G100400.1.v4.1 annot-version=v4.1
ATGGCAACAACCCTAGCAAGAATAGCCCGAAAATCCCTAACAACCACCACCGCTTTCTCACTTAACCGTCACTTCGGGACGGAGGCAGTGGCGGCCGCGA
CAGCGTCGACAAAATCGATAACGCCATCAGCAGATCGGGTGAAATGGGACTATCGAGGGCAGAGACAAATAATTCCGTTAGGTCAATGGCTGCCAAAAGT
AGCTGTGGATGCATACGTGGCACCAAATGTGGTACTCGCGGGTCAAGTTACTGTGTATGATGGAGCATCCGTTTGGAATGGAGCCGTCCTACGTGGCGAT
CTTAATAAGATCACCGTCGGTTTTTGCTCTAATGTTCAAGAACGGTGTGTCGTTCATGCTGCCTGGAACTCTCCTACAGGACTGCCAGCAGAGACATCCA
TTGAAAGGTACGTTACTATTGGTGCTTACAGTCTTTTGCGGTCCTGCACCATTGAGCCAGAATGCATCATTGGGCAGCATTCTATCCTCATGGAAGGATC
TTTGGTGGAGACGCACTCTATCCTTGAAGCTGGGTCTGTGGTTCCACCAGGAAGAAGAATTCCAACTGGTGAACTTTGGGCTGGAAATCCAGCAAGGTTT
GTCAGGACTCTGACCCACGAAGAAACTTTAGAAATTCCTAAACTCGCTGTTGCAATCAATGATCTCAGCAAAACCCATTTCTTCGAGTTTCTTCCCTACT
CCACAGTATATTTAGAGGTTGAGAAGTTGAAGAAGAAGTTGGAGATTAAAGTTTGA
AA sequence
>Potri.012G100400.1 pacid=42784190 polypeptide=Potri.012G100400.1.p locus=Potri.012G100400 ID=Potri.012G100400.1.v4.1 annot-version=v4.1
MATTLARIARKSLTTTTAFSLNRHFGTEAVAAATASTKSITPSADRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVYDGASVWNGAVLRGD
LNKITVGFCSNVQERCVVHAAWNSPTGLPAETSIERYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPTGELWAGNPARF
VRTLTHEETLEIPKLAVAINDLSKTHFFEFLPYSTVYLEVEKLKKKLEIKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48680 AtCAL2, GAMMACA... gamma carbonic anhydrase-like ... Potri.012G100400
[exp]
0 1
AT5G52840 NADH-ubiquinone oxidoreductase... Potri.004G071900
[exp]
1.00 0.9724
AT2G42210 ATOEP16-3 Mitochondrial import inner mem... Potri.006G059300
[exp]
1.41 0.9702
AT4G37830 cytochrome c oxidase-related (... Potri.007G008800
[exp]
1.73 0.9641
AT5G05370 Cytochrome b-c1 complex, subun... Potri.019G132000
[exp]
2.44 0.9376
AT2G33040 ATP3 gamma subunit of Mt ATP syntha... Potri.015G057700
[exp]
3.00 0.9335 Pt-ATPC.2
AT4G16450 unknown protein Potri.006G016300
[exp]
4.89 0.9451
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Potri.013G051500
[exp]
5.00 0.9408
AT1G27390 TOM20-2 translocase outer membrane 20-... Potri.001G330200
[exp]
5.29 0.9369
AT1G64520 RPN12A regulatory particle non-ATPase... Potri.001G088200
[exp]
6.63 0.9323
AT5G15320 unknown protein Potri.005G236500
[exp]
6.85 0.9032

Potri.012G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.