Plant FIBer expression Database

Potri.012G100500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 425 / 3e-144 unknown protein
AT2G15640 43 / 0.0005 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G098700
[exp]
918 / 0 AT5G63520 426 / 6e-145 unknown protein
Potri.004G005700
[exp]
751 / 0 AT5G63520 419 / 8e-142 unknown protein
Potri.011G010200
[exp]
729 / 0 AT5G63520 427 / 3e-145 unknown protein
Potri.011G010100
[exp]
696 / 0 AT5G63520 394 / 2e-132 unknown protein
Potri.012G100600
[exp]
437 / 5e-149 AT5G63520 294 / 3e-93 unknown protein
Potri.015G098800
[exp]
417 / 4e-141 AT5G63520 282 / 1e-88 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011538
[exp]
43 / 0.0004 AT1G47340 50 / 9e-07 F-box and associated interaction domains-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
CL0271 PF10442 FIST_C FIST C domain
Representative CDS sequence
>Potri.012G100500.3 pacid=42783440 polypeptide=Potri.012G100500.3.p locus=Potri.012G100500 ID=Potri.012G100500.3.v4.1 annot-version=v4.1
ATGGAGGAGAAACCGAAAGAACCCAAAATGCCAATGACAAGCTTTGCATCCATAAACGAAGACCTTGTACAAAACATAGTAAAGAGACTACCAGCTTCAT
CCTTTGCATCAGCAGCTTGCGTTAGCAAATCATGGAATCAAATTTGCAATCAAATCCTCTCCAAACCAAAGTTCGCCTCTGCTTTTTCTCTCAATCCAAA
CGAAAAGGTTGCGTTAGAAGAGGTTGTCAATAAGGTTCTCTCTGAGCCCATTAGACCTCATTTTGCTATTGCCAATGTTATTGGCAGTGGAGTTGATCTG
AGAGAAAAACTTGATTTTTTGGCAACAAAACTTGGTTCCCAAACTCCAATTATTGTGTCTTGTGCAAGTGGAATCATGGGAAGAGATGCTGTTACTGGTG
AACATAGAGAGGTTATGTTGGAAGAATATTGGGCTGATGGAGAATCAATTTCATGCTTTGGTATCATTTTGACTGTGGGGTTTTTACCTGGACTAAAAGT
TGATGTCATCCCGCTGTTACAACCAAGAAAGGTACATAGACCGGCTTTGGTTGATTACTTTGTGATGAATATTAGGGATTATGCAGCTTCTGTTTCTGGT
TGGGCATCACCTGCTGGGATAATACTGTTTGGAGATGAAGGTGCTGACCAGAAACCTGTCATGGAAAAGCTGGATCATGCCATGTCAAGGGATACTGTCA
TTGTTGGTGATGAGAGAGCTCAATTCCTGTACCGAAGTGGCGTAGAGTCCCGAAATGACTATGGGAGCAGTGAATATTTTCCTGCTGCAGTTGCTCTTGT
ATTTGCAAGGGATCGAGACAAGCCTTGTGCAGGCACAGGGGAAATCCAATTCCATGCTGCATTATCCTCTGGTGTTTCTGCAATAGGCCCAAGGTACAAG
GCAGTTTCTGTTAGAAAGATTGGATCCGAGACAGGTTGTACGACATTGCTTACTGCCAGAAGAGAAGGGGAACAAGAGATTCAAGATGGTCAAAGGATTC
TAGATGACATCAACAATGAGTTGGTGAACCAAATTGGACGCCCTGACCTGTACATTGGGGTTACTGAACAAAGAAAATGCTTTATTGGGTCAGAGAAGTC
AAGAGTGATGACATTCCTGGTTTTCCATGGAGTTATGGGAGGAGATCAAGAGTACCTTTTTGCTGATGGAGTTGGCATCAGAACTGGTGACTATTTCCAA
TTTTACCATTCAGATCCAACTACTGCACTATCTTCATGTAATGAAGTCTCTAAGAATTTCAGAAAACTGAAGCTAGATTGGAGTTCTAGAAACTGCCTTC
AAGCAGGAGTTTCTGATAATGTCTGTAGTAAGGAGCTTGTTGGAGGTTTTGTTTTCTCTTGTTGTGGCCGTGGTGAATCATTCTTTGAACGTTGCAATGT
TGATAGCTCACCATTTTTGGACAATTTTCCTGGGGTCCCAATGGCCGGAGTATTTTGTCGAGGGGAAATTGGACGTGGCTTTTCAGTTTTGAATGCGGAT
GAAGGCCCAGAAGAAAGGACTCTGCATTGCTGCCTGCATGTATATAGCACTGCATATCTCTTGGTGTCTTATACTCCGGCACCTGCAGAGCATTAG
AA sequence
>Potri.012G100500.3 pacid=42783440 polypeptide=Potri.012G100500.3.p locus=Potri.012G100500 ID=Potri.012G100500.3.v4.1 annot-version=v4.1
MEEKPKEPKMPMTSFASINEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFSLNPNEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDL
REKLDFLATKLGSQTPIIVSCASGIMGRDAVTGEHREVMLEEYWADGESISCFGIILTVGFLPGLKVDVIPLLQPRKVHRPALVDYFVMNIRDYAASVSG
WASPAGIILFGDEGADQKPVMEKLDHAMSRDTVIVGDERAQFLYRSGVESRNDYGSSEYFPAAVALVFARDRDKPCAGTGEIQFHAALSSGVSAIGPRYK
AVSVRKIGSETGCTTLLTARREGEQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQRKCFIGSEKSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDYFQ
FYHSDPTTALSSCNEVSKNFRKLKLDWSSRNCLQAGVSDNVCSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGVFCRGEIGRGFSVLNAD
EGPEERTLHCCLHVYSTAYLLVSYTPAPAEH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.012G100500
[exp]
0 1
AT5G53280 PDV1 plastid division1 (.1) Potri.015G022900
[exp]
3.60 0.8585
AT5G48220 Aldolase-type TIM barrel famil... Potri.014G169100
[exp]
4.47 0.8334
AT1G45000 AAA-type ATPase family protein... Potri.009G120500
[exp]
6.63 0.8050
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Potri.005G232700
[exp]
6.92 0.8223
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Potri.007G022700
[exp]
8.48 0.8121
AT3G06483 ATPDHK, PDK pyruvate dehydrogenase kinase ... Potri.010G002000
[exp]
18.16 0.8074 Pt-PDK.1
AT3G61180 RING/U-box superfamily protein... Potri.002G155200
[exp]
18.52 0.8132
AT3G06050 PRXIIF, ATPRXII... peroxiredoxin IIF (.1) Potri.019G024000
[exp]
18.70 0.8475 PtrcPrxIIF,Pt-PRX.1
AT2G30942 Protein of unknown function (D... Potri.002G263100
[exp]
18.97 0.7945
AT1G51060 HTA10 histone H2A 10 (.1) Potri.001G415700
[exp]
26.26 0.7786 HTA903

Potri.012G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.