Plant FIBer expression Database

Potri.012G100600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 294 / 3e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G098800
[exp]
839 / 0 AT5G63520 282 / 1e-88 unknown protein
Potri.012G100500
[exp]
405 / 3e-136 AT5G63520 425 / 3e-144 unknown protein
Potri.015G098700
[exp]
399 / 3e-134 AT5G63520 426 / 6e-145 unknown protein
Potri.004G005700
[exp]
375 / 8e-125 AT5G63520 419 / 8e-142 unknown protein
Potri.011G010200
[exp]
372 / 3e-123 AT5G63520 427 / 3e-145 unknown protein
Potri.011G010100
[exp]
354 / 2e-116 AT5G63520 394 / 2e-132 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.012G100600.2 pacid=42782594 polypeptide=Potri.012G100600.2.p locus=Potri.012G100600 ID=Potri.012G100600.2.v4.1 annot-version=v4.1
ATGGCGACGCAGCTATCAGGAAAAAGGATGAGCGGGTTCTCTCTGGTGGATGAAGAGATTGTACAAAATATACTCTCAAGGTTACCGGCTTTGACCTTTG
CGTATGCTGCCTGCGTTAACAAACGCTGGTACAAAATATGCAGCAAAATACTCAAAAGGCCTAAGCTTGCTTCAGCTCTCTCCCTCAACCCTTCTCTCCA
TGATGCTGTGAAAGAGGTCATTGAGCAGGTTCTCTCTGAGCCTATTCGTCCACACTTTGCTATTGCCTGCATTAGCAAAGAGTTCAACTTGGAACTGGCT
CATGGACTGATAATTGAAAAACTGGGTTCAAGAATCCCAATAATTACTAATGTTTCCAGTGGAATCATTGGTGTCGATGGCATTGCTGATGAACTGTTTG
AGGAAAAATGGGAAACAACTTCCGGTCCTAATATCCAAGAATCAGATACAGCTGAAAGAGGACTAGTTCTGCTCGTTGGATTTTTACCTGGACTCAAAAT
TGGCACCATTCCGCTGTTACAACCGAGACAGGAATCCAATACATTGGTTGACAAATTTGTGATGGATATTTTACATTACACAGCTGCTGTTTCAGATTGT
GCAGCCCCTGCTGGGATCATAATGTTTGGAGACAAAACCACTGACATGAAACCTATTGTTGCAAAGATGGATTGTGCTATGCCAGAAGAAACAGTCATTG
TAGGCGATGCAAGTGCCGACTTCATTTTCAGAACTGGGGATGATTCTTTAAATCAACTCGTGTATACATGCTGCTTTCAAGCTGTTGCTCTTGTATTTGC
AAGGGATAGATACAAGCCTGAAGGTTTAGGAGAAATTCAATTCCACGTCACAAAGTCAACAGGTGTACTACCATTTGGTCCCAATCTAAAGGCAGTTTGT
GTTGTACCAAAAGATTCAGAGCGTTCATGTCTGTTTGCAAGACTGGAAGGACAGGATGGCATTATGGCTGCCGGGGCGATTTTAAATGAAATCAAACAAC
AGTTTAGGGAAGCAGATACGTTTGCTGATCTTTACATTGGTGTCACCAAAGAAACTCAACGCACCAGTGATTCAGGGATTTTGACACCAGGAAAATCTTT
GGATTTCTACAAAGTCATAGGAGGAGGAGAATATTACTTTACTGTCAATGGTATCGGCATCAGAACTGGTGATTCCTTCCTATTCTACCAGTCAGATTCG
GCTACTGCTTCATCATCATGTGACCATGCCTTCAACAAACTTCTAGCTCTGAAGGCAGAACTGAAAAGCAAAAATTATCTTCGTTTGAGCAATTTAGCTG
ACAAGGACGATAAGGAAGAAGTGCTTGGTGGTTTCATTTTCTCTTGCTATCATCGCGGTGAGTCATTCTTCGGAGACACTTTTGTTGATAGCTACCCATT
CTGCAACAACTTTCCTACAGCTCCAGTAGCAGGATTATTCTGCAGAGGAGAAATAGCAAGGGGCCCCAAAAGCTTGATGAACGAAGAATATGACGACGAA
ACCTCCCCTCGATGCTGCGTCCATGTTTACAGCACAATATATTTGGTTATGTCATATCTTCCACCACCTTTAGAGAGTTAA
AA sequence
>Potri.012G100600.2 pacid=42782594 polypeptide=Potri.012G100600.2.p locus=Potri.012G100600 ID=Potri.012G100600.2.v4.1 annot-version=v4.1
MATQLSGKRMSGFSLVDEEIVQNILSRLPALTFAYAACVNKRWYKICSKILKRPKLASALSLNPSLHDAVKEVIEQVLSEPIRPHFAIACISKEFNLELA
HGLIIEKLGSRIPIITNVSSGIIGVDGIADELFEEKWETTSGPNIQESDTAERGLVLLVGFLPGLKIGTIPLLQPRQESNTLVDKFVMDILHYTAAVSDC
AAPAGIIMFGDKTTDMKPIVAKMDCAMPEETVIVGDASADFIFRTGDDSLNQLVYTCCFQAVALVFARDRYKPEGLGEIQFHVTKSTGVLPFGPNLKAVC
VVPKDSERSCLFARLEGQDGIMAAGAILNEIKQQFREADTFADLYIGVTKETQRTSDSGILTPGKSLDFYKVIGGGEYYFTVNGIGIRTGDSFLFYQSDS
ATASSSCDHAFNKLLALKAELKSKNYLRLSNLADKDDKEEVLGGFIFSCYHRGESFFGDTFVDSYPFCNNFPTAPVAGLFCRGEIARGPKSLMNEEYDDE
TSPRCCVHVYSTIYLVMSYLPPPLES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.012G100600
[exp]
0 1
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Potri.019G004400
[exp]
1.41 0.9942
AT2G15620 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE R... Potri.009G101600
[exp]
2.00 0.9900
AT1G78980 SRF5 STRUBBELIG-receptor family 5 (... Potri.014G001200
[exp]
6.92 0.9880
Potri.006G271692
[exp]
8.48 0.9830
AT4G05030 Copper transport protein famil... Potri.016G002600
[exp]
11.22 0.9791
AT5G06370 NC domain-containing protein-r... Potri.013G043100
[exp]
13.41 0.9826
AT1G53440 Leucine-rich repeat transmembr... Potri.016G011601
[exp]
13.67 0.9823
AT5G38280 PR5K PR5-like receptor kinase (.1) Potri.007G141125
[exp]
14.28 0.9793
AT3G13750 BGAL1 beta-galactosidase 1, beta gal... Potri.003G038500
[exp]
15.81 0.9688 BGAL1.2
AT5G35390 Leucine-rich repeat protein ki... Potri.006G078600
[exp]
16.30 0.9720

Potri.012G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.