Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50570 221 / 7e-70 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 221 / 7e-70 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G20980 137 / 1e-35 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 136 / 2e-35 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27370 128 / 8e-34 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT2G47070 130 / 2e-33 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 130 / 2e-33 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G69170 127 / 3e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27360 123 / 6e-32 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT2G33810 114 / 3e-31 SBP SPL3 squamosa promoter binding protein-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G098900 [exp] 532 / 0 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G058600 [exp] 237 / 9e-76 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G169400 [exp] 219 / 1e-69 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.008G097900 [exp] 154 / 1e-42 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 146 / 1e-39 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G060400 [exp] 136 / 7e-36 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.005G258700 [exp] 137 / 1e-35 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.018G149900 [exp] 133 / 3e-35 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.002G002400 [exp] 134 / 2e-34 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003126 [exp] 179 / 4e-54 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 176 / 5e-53 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10015764 [exp] 173 / 7e-51 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 142 / 5e-38 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 139 / 7e-37 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10000643 [exp] 138 / 3e-36 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10036812 [exp] 130 / 2e-34 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011356 [exp] 129 / 4e-34 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10023818 [exp] 128 / 5e-34 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10021614 [exp] 128 / 2e-33 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.012G100700.4 pacid=42782803 polypeptide=Potri.012G100700.4.p locus=Potri.012G100700 ID=Potri.012G100700.4.v4.1 annot-version=v4.1 ATGGACTGGAACTTGAAGGCAACTTCTTGGGATTTGACTGAATTTGAGCAAGGAGCTGTTCCAAGTATTTGCATAGATGCATTTGGTAGGCCAACTAACT TTGGAGCTAACAGGACTGGAGGGGGTTTCTCAATTGATTTGAAACTTGGTAGGGTTGGTAATTCGAGTGATGAATCTATGGTTAACTGGAAGCAGCCTGG AGTCTCAAAACTAGAGTCTTCACCTTCAGGATCAACGAAGAGGGCACGTGGAGCTAACAATGGAACTCAGGTAGCTATGTGCCTTGTTGATGGTTGCAAC TCTGACCTCAGTACATGCAGGGACTACCATAGGCGCCATAAGGTCTGTGAGCTTCATTCCAAGACTCCTCAGGTTACCATTGGTGGTCAGAAGCAGCGAT TCTGCCAGCAATGTAGCCGATTCCATTCGCTGGAGGAATTTGACGAAGGGAAAAGAAGCTGCAGGAAACGTCTTGATGGACACAATCGGCGGCGAAGGAA GCCTCAGCCAGATCCCTTTTCTCATCCTCCAAGTTTCTTACCCAATCACCAAGGTACCCAAATATTTCCATTCTCTAGTTCCCATGTATATCATTCCACA GCTGTAGTGAATTCCACCTGGTCTGGAGTTGCTAATACTGAGGCAGATGGAGGGCACTATAATCTGCATCAACTTCCTGACAAACAGAACCTGTTCCTTG GATCATCCTCGAACAGCTACAAAGGGGGGAAGCTGTTCCCTTTTTTGCAATGTGACAATCCTTGCCTTAACAATCAGACATCGGAAGCTTCTGTTTGCCT GCCGCTTCCAAGAGCCATTGCTTTTCCAGGAAGCAGTGGGGCAAGTAGCCATAGTATGTTCTGTGACAGGTTAGCAACACAAGTACAAGACTCGGATTGC GCGCTCTCTCTCTTCTGTCATCAACACAGACGCATGCATGGGGAAACCCCATGCTGCAACGACATAACTCAGTCCCCTTTTCGCATCCCATAG
AA sequence Show only first row Show all	>Potri.012G100700.4 pacid=42782803 polypeptide=Potri.012G100700.4.p locus=Potri.012G100700 ID=Potri.012G100700.4.v4.1 annot-version=v4.1 MDWNLKATSWDLTEFEQGAVPSICIDAFGRPTNFGANRTGGGFSIDLKLGRVGNSSDESMVNWKQPGVSKLESSPSGSTKRARGANNGTQVAMCLVDGCN SDLSTCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDPFSHPPSFLPNHQGTQIFPFSSSHVYHST AVVNSTWSGVANTEADGGHYNLHQLPDKQNLFLGSSSNSYKGGKLFPFLQCDNPCLNNQTSEASVCLPLPRAIAFPGSSGASSHSMFCDRLATQVQDSDC ALSLFCHQHRRMHGETPCCNDITQSPFRIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	0	1
					Potri.008G213600 [exp]	1.73	0.7993
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.007G016700 [exp]	9.00	0.7847
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.016G043700 [exp]	10.29	0.7954
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	12.24	0.7786
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.015G073000 [exp]	14.14	0.7135
AT2G33240		ATXID, XID	myosin XI D (.1)		Potri.010G062480 [exp]	14.49	0.7777
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G120800 [exp]	16.91	0.7534
AT4G22120			ERD (early-responsive to dehyd...		Potri.011G009801 [exp]	17.32	0.7346
AT3G15160			unknown protein		Potri.011G135800 [exp]	21.90	0.7543
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	22.00	0.7816

Compare expression of checked genes

Potri.012G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.