Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24940 490 / 4e-176 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT5G50580 488 / 4e-175 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G50680 488 / 4e-175 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT2G30110 92 / 3e-20 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 89 / 2e-19 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G32410 65 / 1e-11 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 64 / 5e-11 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G21470 45 / 4e-05 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G099000 [exp] 595 / 0 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.001G280600 [exp] 85 / 5e-18 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 84 / 1e-17 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 82 / 7e-17 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.014G153500 [exp] 74 / 2e-14 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G229100 [exp] 71 / 3e-13 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008977 [exp] 518 / 0 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1) Lus10028846 [exp] 515 / 0 AT4G24940 475 / 7e-170 SUMO-activating enzyme 1A (.1) Lus10022666 [exp] 86 / 3e-18 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10012507 [exp] 86 / 4e-18 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 82 / 8e-17 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 73 / 5e-14 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10015115 [exp] 66 / 1e-11 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031562 [exp] 51 / 6e-07 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10017479 [exp] 45 / 8e-05 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Potri.012G100800.3 pacid=42784388 polypeptide=Potri.012G100800.3.p locus=Potri.012G100800 ID=Potri.012G100800.3.v4.1 annot-version=v4.1 ATGAACGGAGAGGAGTTGACAGAGCAAGAAACTGCTTTGTATGATCGCCAAATTAGGGTTTGGGGTGCTGATGCTCAACGAAGACTAAGCAAATCCCACA TATTGGTTTATGGAATGAAGGGCATTATTGCTGAGTTTTGCAAGAACATTGTTTTGGCTGGAGTTGGAAGTCTGACACTAGTGGATGACAGGGCTGTGTC TGAAGAAGCGTTGTCTGCTAATTTTTTGATACCCCCTGATGAAAGTGTTTGCATTGGGAAAACCCTTGCTGAGCTTTGCTGTGATTCTTTGAGAGAATTT AACCCCATGGTTCGTGTTTCGGTTGAAAAAGGTGATTTGGCAAGCTTGGGTGCGGAATTCTTTGATAAGTTTGATGTTGTAGTTATCAGTTGCTGCTCGC TAGCCACCAAAAAATTAATCAATGAAAAGTGCCGGAAGTTATCAAAGCGTGTATCTTTTTATGCAGTTGACTGTAGAGATTGTTGTGGTGAGATCTTTGT TGATTTGCAGAAGTACAATTATGCAAAGAAAAAGACAGATGGAGCTACTGAATGTGAACTGCAATATCCAAGTTTTCAGGAAGCTATTTCAGTGCCTTGG AGATCACTTCCCCGAAAAGTCTCAAAGCTTTATTTCGCTATGAGAGTGATTGAAAGGTTTGAAGAGGCTGAAGGACGCAAGCCAGGAGAAATTTGTATCG AGGACCTTCCTGCTGTTCTAAAGCTGAAAAAGGAACTTTGTGAGGCACAGTCAGTAAATGAATCTCACGTTCCGGATACCCTCCTTGAAAGATTGGTTAT GGGTGCAAAAGAGTTCCCTCCAGTTTGTGCCATTATTGGAGGAACTCTTGGACAGGAGGTAATCAAAGCAATATCAAGCAAAGGGGATCCCGTCAAGAAT TTCTTCATCTTTGATGCTACGGATGGGAAAGGCATGATAGAGGACATATCAAACCCTAACCTGGAAAGCTGA
AA sequence Show only first row Show all	>Potri.012G100800.3 pacid=42784388 polypeptide=Potri.012G100800.3.p locus=Potri.012G100800 ID=Potri.012G100800.3.v4.1 annot-version=v4.1 MNGEELTEQETALYDRQIRVWGADAQRRLSKSHILVYGMKGIIAEFCKNIVLAGVGSLTLVDDRAVSEEALSANFLIPPDESVCIGKTLAELCCDSLREF NPMVRVSVEKGDLASLGAEFFDKFDVVVISCCSLATKKLINEKCRKLSKRVSFYAVDCRDCCGEIFVDLQKYNYAKKKTDGATECELQYPSFQEAISVPW RSLPRKVSKLYFAMRVIERFEEAEGRKPGEICIEDLPAVLKLKKELCEAQSVNESHVPDTLLERLVMGAKEFPPVCAIIGGTLGQEVIKAISSKGDPVKN FFIFDATDGKGMIEDISNPNLES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.012G100800 [exp]	0	1
AT1G02330			unknown protein		Potri.014G110200 [exp]	2.82	0.8002
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	6.92	0.7911
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	7.14	0.7929
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	10.90	0.8021
AT5G42570			B-cell receptor-associated 31-...		Potri.014G154800 [exp]	13.19	0.7336
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.004G125000 [exp]	14.28	0.7756
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	14.86	0.7414
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	18.00	0.7646
AT5G55530			Calcium-dependent lipid-bindin...		Potri.011G088400 [exp]	19.23	0.7613
AT1G16180			Serinc-domain containing serin...		Potri.001G038100 [exp]	23.23	0.7792

Compare expression of checked genes

Potri.012G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.