Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 329 / 4e-110 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 246 / 2e-78 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 240 / 4e-76 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G099600 [exp] 698 / 0 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 322 / 2e-107 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 316 / 5e-105 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 316 / 5e-105 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 275 / 5e-89 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 273 / 8e-89 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 267 / 5e-86 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 261 / 1e-83 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 242 / 9e-77 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017751 [exp] 327 / 2e-109 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 327 / 3e-109 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 274 / 2e-88 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 272 / 6e-88 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 262 / 5e-84 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 260 / 2e-83 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10038190 [exp] 256 / 4e-82 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 256 / 4e-82 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10011839 [exp] 253 / 6e-81 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 243 / 5e-77 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF01643 [poplar] [flax] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Potri.012G101500.1 pacid=42783564 polypeptide=Potri.012G101500.1.p locus=Potri.012G101500 ID=Potri.012G101500.1.v4.1 annot-version=v4.1 ATGTGCTTGTGTTCAATGAATGATTACTTAGCAATGGCATCAATGGCGACAAAGGGCGCGGCTGGATTATATTTTCCAGGGAATTTGCACAAGGTAGAGA AAAAGAATAATGTGACGGTATTGGCCAAGGCAGGATTTCCTTGTTCTTGGCACATGATCACACCGAAAAAACGAAGCTTTTACGCCATAGCAAGTGCCGG TAATCCTCCAAGCCTGGACATTACAAATGGGAAAAAGGTGAATGGGATTCATGTGAGGGAGACTCCATCTCCTTACATAAGCAATACGAATGCCGGTGGG TTGGCAATCCATAGCAATGTTGCTGAACCTCACACATATTTGCTTGGGAGGTTTGTGGAGGATAGGCTGATTTATAGGCAGACGTTCAGTATCAGATCTT ATGAGATTGGACCTGACAAAACCGCCACAATGGAAACATTAATGAATCTCCTTCAGGAAACTGCACTGAATCATGTGACAAGCTCAGGACTAGCTGGAAA TGGCTTCGGTGCTACCCGAGAGATGAGCCTCAGGAAACTTATTTGGGTAGTCACTCGCATTCACGTTCAAGTACAGCGATACAGCTGCTGGGGAGACGTT GTCGAGATCGATACATGGGTAGATGCAACCGGGAAGAATGGTATGCGCAGGGACTGGATAATTCGAGACTACAACACCAAAGAGATCATAACAAGAGCAA CAAGCACATGGGTGATCATGAATAGAGAAACAAGAAAGCTATCCAAAATCCCAGATGAAGTCAGGGAAGAATTGGTACCATTCTACATAAACAGGCTTTC GATTGCTGCTGAACACAATGATGTTGAGAAAATTGATAAGCTTAACAATGAAACAGCAGGGAGAATTCGATCCGGCTTAGCTCCAAGATGGAGTGATATG GATGCCAACCAACATATAAATAATGTCAAATACATTGGATGGATTCTGGAGAGTGTGCCAATGCATGTCCTGGAACATTACAATATGACAAGCATGACCC TTGAGTATCGACGAGAGTGTCGACAATCAAATCTGCTCGAATCCTTAACAAGCACGAGCGAAGATTCAAACAGCGGTTCCAGTAATCGCAAAGCAGGCAT GGAATACACGCATCTGCTGCGTATGCAATCAGACAAGGCAGAGATAGTTCGTGCAAGAACGGAATGGAAATCCAAATTAAAGCACAAGTGA
AA sequence Show only first row Show all	>Potri.012G101500.1 pacid=42783564 polypeptide=Potri.012G101500.1.p locus=Potri.012G101500 ID=Potri.012G101500.1.v4.1 annot-version=v4.1 MCLCSMNDYLAMASMATKGAAGLYFPGNLHKVEKKNNVTVLAKAGFPCSWHMITPKKRSFYAIASAGNPPSLDITNGKKVNGIHVRETPSPYISNTNAGG LAIHSNVAEPHTYLLGRFVEDRLIYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHVQVQRYSCWGDV VEIDTWVDATGKNGMRRDWIIRDYNTKEIITRATSTWVIMNRETRKLSKIPDEVREELVPFYINRLSIAAEHNDVEKIDKLNNETAGRIRSGLAPRWSDM DANQHINNVKYIGWILESVPMHVLEHYNMTSMTLEYRRECRQSNLLESLTSTSEDSNSGSSNRKAGMEYTHLLRMQSDKAEIVRARTEWKSKLKHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.012G101500 [exp]	0	1
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	12.20	0.6532
AT3G46450			SEC14 cytosolic factor family ...		Potri.001G237400 [exp]	20.00	0.6126
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.018G062900 [exp]	21.14	0.6320
AT4G33230			Plant invertase/pectin methyle...		Potri.006G134700 [exp]	53.21	0.6069
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	54.32	0.6050
AT3G06150			unknown protein		Potri.010G030900 [exp]	60.33	0.5802
AT3G60110			DNA-binding bromodomain-contai...		Potri.003G212500 [exp]	61.29	0.6000
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110100 [exp]	62.92	0.6032
AT2G32240			unknown protein		Potri.006G021200 [exp]	67.99	0.5875
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	114.74	0.5453

Compare expression of checked genes

Potri.012G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.