Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 280 / 7e-93 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 280 / 7e-93 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47350 276 / 2e-92 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50770 277 / 5e-92 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47360 268 / 5e-89 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50690 268 / 6e-89 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 268 / 6e-89 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT4G10020 225 / 4e-71 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G03330 100 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 89 / 3e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G099900 [exp] 344 / 5e-119 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.015G100000 [exp] 341 / 8e-118 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 338 / 2e-116 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 306 / 8e-104 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 284 / 7e-95 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.019G073200 [exp] 237 / 3e-76 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 234 / 2e-75 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 88 / 1e-19 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G084100 [exp] 85 / 2e-18 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022441 [exp] 301 / 8e-102 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10016748 [exp] 303 / 1e-100 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022442 [exp] 282 / 2e-94 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10032556 [exp] 279 / 1e-92 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 269 / 1e-88 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 268 / 2e-88 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 263 / 2e-86 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10006178 [exp] 220 / 1e-69 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 220 / 4e-69 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 220 / 5e-69 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.012G102000.1 pacid=42783709 polypeptide=Potri.012G102000.1.p locus=Potri.012G102000 ID=Potri.012G102000.1.v4.1 annot-version=v4.1 ATGGATATGACTAGAAAGTTAATGAATATTTTACTTCCTCCTATAGCACTCATTGTGCTTCTTTTAATCTTGCCACCATATCTTGTTCTCAAGTTTCTTG GTCTCATAAAAGGATTTACTGCATACAGCGAAGACGTGGCCGGAAAAGTAGTGCTTATAACTGGAGCATCTTCCGGCATTGGTGAGCAAATTGCATACCA ATATGCAAGGAGAGGAGCTCGTTTAGCACTCGTTGCTAGAAGAGAAGATCGTCTTCGAGGAGTTGCAAGTGAAGCCAGGAAGATGGGTTCGCCAGATGTT ATAATGATACGTGCAGATGTTTCCAAGGTTGAAGATTGCAAGAGGTTTGTTGATGAGGCAATAAGACATTTTGGACAGTTGGATCATCTGGTGAATAATG CTGGGATTTCTTGTGTTTGCTTGTTAGAAGAAGCTCCCAACATATCTGATTTGAATTCTGTAGTGGACACAAACTTCTGGGGCTCGGTGTATGGCACTTA TTTTGCAGTTCCATACCTCAGAAAAAGTCAAGGGAAAATTATCGTCATCTCTTCAGCTGCTGGACGTTTCCAAAGTCCAGGAGCAAGCATATACGGTGCA AGCAAAGCAGCCTTAATAAGCCTGTATGAATCACTGAGGATTGAATTTGGTTCAGATATTGGAATAACAATTGTGACTCCTGGGCTTGTGAAGTCAGAAA TGACCTCAGGCGAGTTCCGATCAAAGGCTAAAATAGAAAGCATCCCAATTGAATCAACTGAGGATTGTGCTAAAGCAATTGTGGACAGCGCTTGCCGTGG AGACAGGTACTTGGTAGAGCCATCATGGGTAGGGATACTTTTCCTGTTCAAGCTGCTTTGTCCTGAAGTCCTGGAATGGTGTCTCCACTGGCTATTGTCC TCTGCACCAAGGAATCTCAAGAAGGCTGCATAG
AA sequence Show only first row Show all	>Potri.012G102000.1 pacid=42783709 polypeptide=Potri.012G102000.1.p locus=Potri.012G102000 ID=Potri.012G102000.1.v4.1 annot-version=v4.1 MDMTRKLMNILLPPIALIVLLLILPPYLVLKFLGLIKGFTAYSEDVAGKVVLITGASSGIGEQIAYQYARRGARLALVARREDRLRGVASEARKMGSPDV IMIRADVSKVEDCKRFVDEAIRHFGQLDHLVNNAGISCVCLLEEAPNISDLNSVVDTNFWGSVYGTYFAVPYLRKSQGKIIVISSAAGRFQSPGASIYGA SKAALISLYESLRIEFGSDIGITIVTPGLVKSEMTSGEFRSKAKIESIPIESTEDCAKAIVDSACRGDRYLVEPSWVGILFLFKLLCPEVLEWCLHWLLS SAPRNLKKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.012G102000 [exp]	0	1
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.012G101900 [exp]	2.82	0.9999
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.006G108100 [exp]	4.89	0.9999	Pt-LTP1.1
AT4G35160			O-methyltransferase family pro...		Potri.013G141301 [exp]	5.29	0.9999
AT4G35160			O-methyltransferase family pro...		Potri.013G143800 [exp]	5.91	0.9999
AT4G35160			O-methyltransferase family pro...		Potri.013G136300 [exp]	6.48	0.9999
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176700 [exp]	7.00	0.9998	CHS.3
AT1G47620		CYP96A8	"cytochrome P450, family 96, s...		Potri.005G094500 [exp]	9.48	0.9998	CYP96G1,Pt-CYP96.2
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212300 [exp]	10.48	0.9998
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133700 [exp]	11.91	0.9945
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008906 [exp]	12.48	0.9997

Compare expression of checked genes

Potri.012G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.