Plant FIBer expression Database

Potri.012G102500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63550 248 / 4e-75 DEK domain-containing chromatin associated protein (.1.2)
AT3G48710 237 / 1e-71 DEK domain-containing chromatin associated protein (.1)
AT5G55660 177 / 2e-47 DEK domain-containing chromatin associated protein (.1)
AT4G26630 158 / 6e-41 DEK domain-containing chromatin associated protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G100700
[exp]
539 / 0 AT5G63550 245 / 6e-74 DEK domain-containing chromatin associated protein (.1.2)
Potri.011G093200
[exp]
202 / 4e-57 AT4G26630 199 / 6e-55 DEK domain-containing chromatin associated protein (.1.2)
Potri.001G367400
[exp]
198 / 1e-55 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035905
[exp]
298 / 5e-93 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1)
Lus10022439
[exp]
298 / 9e-93 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1)
Lus10025759
[exp]
298 / 3e-91 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1)
Lus10016746
[exp]
213 / 1e-61 AT3G48710 263 / 1e-81 DEK domain-containing chromatin associated protein (.1)
PFAM info
Representative CDS sequence
>Potri.012G102500.2 pacid=42783004 polypeptide=Potri.012G102500.2.p locus=Potri.012G102500 ID=Potri.012G102500.2.v4.1 annot-version=v4.1
ATGGCGAGTGAAGCCCTAGAAGAGAAGAAATCAGAGGAGGAAGCTCCTGCTGCTGAGGAGTCAAAACCAGGAGCAGAAAAGGAGCAAACTGAAAACGAAG
GACCGATGGATAGTGCTGAGAATGAAGCGAAGGAGGAGGCCGACAACGAAGAAGTGAAAGGAGAAGAGGAGACTGCGAAAGAGGGTGCAGAAAAGGAGGA
GTCCTTGGGAAATGAGGAGAAAGAAGAAGAAGCGAAAGATAAAGGAGAGGAAGAGGTAGAGAACAAGAAATCCAAGCGAAGAAGCAAGAAATCGAGTAAG
AATTCGACTGGGAAGAAAGTGAAGGAGCTGGTGACTCCGAGTAGTGATAGGCCTACCAGAGAGAGGAAGGTGGTGGAAAGGTACTCTGTGCCTGAGCCTG
GACGGTCAGCGACCAAGCCTTTTTCTATTGAAAAGGGACGAGGAACACCTCTTAAGGACATTCCCAATGTGGCTTTCAAGTTGTCCAAGAGAAAAGCTGA
TGACAATCTGCAGATGCTTCACTTGATTCTGTTTGGAAAGAAAGGAAAGGCACACAATTTAAAGAAGAACATAAGCCAGTTTTCAGGCTATGTGTGGGTC
GGGAATGAGGAAAAACAGAAAGCAAAAGTAAGGGAAAAGCTTGACAAGTGCGTCAAAGAGAAGTTGATGGATTTTTGTGATGTGCTCAATATCCCCATAA
ATAGGTCTGTTGTGAAAAAGGAGGAACTCACTGTAAAAATATTGGAATTCTTGGAATCCCCACATTCCACCACTGATGTTCTGCTTGCTGACAAGGAACA
GAAAGGTAAGAAGCGTAAGGTCTCAACTAGCAAAAATGTGAGTCCTGGTGAAGCATCAACGACACCAGCAAAGAAACGAAAACAAACAACTCAAAGTGGA
CAGAAACGAAAGCATTCGTTCAAAGATGAGGACGACGACGATGAAGATAACGTTGAATCACTAGATGCTAAAGATGATTCGGAAGATGATGGTGAAAATG
AGGCAGGAACGAAAGACATGAGTGATCACGAGGAGACTAAATCAGAAGAAGAGGAGGATGAGCCAAAGGAGCAGACACCATCTAAGAAATCAAAAAAATC
TTCAAAGCAGAGTTCGGTGGCTAAAAGTGCAGAAAAAGCTACCCTTGGCAAGAAAAGAACCCCTGCAAAACCTGTTAAAGGTCTAGAAAAATCAACCAAA
AAATCTTCTGACTCGTCATCAAAAAAAGGTGCTAAAGATACTGATGGAACTTCTGGTTCAATTTCTAAATCAAAGGGATCTGCATCTAAGAAACAAAAAG
TTGAAAAGGAAAGCCCGAAGGACCGAAGTGCTTCCTCTAAAGACAAGGTCAATGCCAAGAAACAGTCAACCAAGTCCCCATCAAAGGCTTCTGCAAAAGA
TCAAGGTAAAGCCAAGTCTAACAAAAAGGCCAAGGCAGAACCCACCAGACAAGAGATGCATGCAGTTGTAGTAAATATTCTGAAGGAAGTTGATTTCAAT
ACTGCAACTCTATCTGATATTCTCAGACAACTTGGTGCCCACTTCGGCATAGATCTAATGCATAGAAAAGCGGAAGTGAAGGATATCATTACAGATGTGA
TAAATAGCATGTCTGATGATGAAGAGGAAGGTGAAGGGGAGGAAGCTGAGGATGATGCTGAAGCTGGTGATGATGCAGATAAAGATGGAGACGAGGAAGA
TGACTAG
AA sequence
>Potri.012G102500.2 pacid=42783004 polypeptide=Potri.012G102500.2.p locus=Potri.012G102500 ID=Potri.012G102500.2.v4.1 annot-version=v4.1
MASEALEEKKSEEEAPAAEESKPGAEKEQTENEGPMDSAENEAKEEADNEEVKGEEETAKEGAEKEESLGNEEKEEEAKDKGEEEVENKKSKRRSKKSSK
NSTGKKVKELVTPSSDRPTRERKVVERYSVPEPGRSATKPFSIEKGRGTPLKDIPNVAFKLSKRKADDNLQMLHLILFGKKGKAHNLKKNISQFSGYVWV
GNEEKQKAKVREKLDKCVKEKLMDFCDVLNIPINRSVVKKEELTVKILEFLESPHSTTDVLLADKEQKGKKRKVSTSKNVSPGEASTTPAKKRKQTTQSG
QKRKHSFKDEDDDDEDNVESLDAKDDSEDDGENEAGTKDMSDHEETKSEEEEDEPKEQTPSKKSKKSSKQSSVAKSAEKATLGKKRTPAKPVKGLEKSTK
KSSDSSSKKGAKDTDGTSGSISKSKGSASKKQKVEKESPKDRSASSKDKVNAKKQSTKSPSKASAKDQGKAKSNKKAKAEPTRQEMHAVVVNILKEVDFN
TATLSDILRQLGAHFGIDLMHRKAEVKDIITDVINSMSDDEEEGEGEEAEDDAEAGDDADKDGDEEDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63550 DEK domain-containing chromati... Potri.012G102500
[exp]
0 1
AT4G36920 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APE... Potri.007G046200
[exp]
1.00 0.8759 AP2.15,RAP2
AT5G63550 DEK domain-containing chromati... Potri.015G100700
[exp]
1.41 0.8435
AT5G39570 unknown protein Potri.017G087200
[exp]
3.31 0.8239
AT1G26580 unknown protein Potri.010G159700
[exp]
4.24 0.8330
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.008G183600
[exp]
5.47 0.8350
AT5G25060 RNA recognition motif (RRM)-co... Potri.018G017200
[exp]
9.53 0.8329
AT5G61150 VIP4 VERNALIZATION INDEPENDENCE 4, ... Potri.012G065600
[exp]
9.94 0.8299
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Potri.012G106100
[exp]
10.24 0.8051 Pt-ARF2.2
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.008G045300
[exp]
11.83 0.7979
AT2G45460 FHA SMAD/FHA domain-containing pro... Potri.014G071400
[exp]
12.36 0.8427

Potri.012G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.