Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24970 769 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 769 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 613 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36280 445 / 2e-146 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36290 445 / 2e-146 CRT1 compromised recognition of TCV 1 (.1) AT1G19100 425 / 3e-138 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 306 / 4e-95 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100900 [exp] 1323 / 0 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 682 / 0 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 454 / 2e-149 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.012G089000 [exp] 436 / 4e-142 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 431 / 7e-141 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 96 / 3e-20 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016745 [exp] 798 / 0 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 794 / 0 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10041578 [exp] 662 / 0 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 442 / 5e-146 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10039959 [exp] 419 / 3e-136 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10042100 [exp] 406 / 4e-129 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 330 / 2e-103 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 325 / 2e-102 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.012G102800.2 pacid=42783647 polypeptide=Potri.012G102800.2.p locus=Potri.012G102800 ID=Potri.012G102800.2.v4.1 annot-version=v4.1 ATGGGTGGCAATGTAAAGCGTGAGATTCTCGAGCCGTTACCTAATCGACGAAACGCCGCCGTTTCCGGCGTTCCTCCCGCGGTAATCGAACTCAGTAGCA GCAGTGAAAGTAGCAGCGGTAGCGGGAGTGAGTCGGAATCCGAGATGGATGGAAACAGTGTCATCTCTAAGAGACCGAGGGGTTCTAGTGGTGTTAATGG AGGTACTGAGAAGAAGAAGAGGAGGAAGAGGAAGAGGAATTTTGAGGATTTAGGTGTTGTGTTGCCGTTGGGGTTTCTCGCTCCAATTACGCCGCCGCCG GATTCGGAGACGCCCTCTGAAGCGGAGATGATGGCGGTGGAGTCGACGGAGAGTAGGAGAGTGAGTTTGACTGGTCAAAGTAGTAAGCAGTTCTGGAAAG CTGGTGATTATGAGGGTGCTCCTCGAGCTAATTGGGATTCATCTTTTGGTGGAATGGATCATGTTCGGGTTCATCCAAAATTTCTGCATTCTAATGCAAC TAGTCATAAATGGGCGCTCGGAGCTTTCGCGGAACTTTTGGACAATGCGTTGGATGAGTTTGGCAATGGAGCCCGGTTTGTTAACATAGATATGGTAGAA AGTAAGAAGGATCAGAGCAGAATGCTTTTGATTGAAGATAACGGTGGTGGAATGGATCCAGATAAACTGCGACAATGCATGTCTTTGGGTTATTCCGCAA AAAGCAAAGTGGCTAACACCATTGGACAATATGGCAATGGGTTTAAGACAAGTACCATGAGGCTTGGAGCAGATGTCATTGTGTTTTCACGTTGTCAGGG AAAAGATGGCAAATTTCCTACACAGAGCATTGGATTGCTATCATACACTTTTTTGAGGAGCACAGGGAAAGAAGATATTGTGGTGCCCATGCTTGACTAT GAAAGAAAGGGACGGGAATGGAGCAGGATGGGACGGTCTTCTACTGGTGATTGGAATAGAAATGTGGAGACAATAGTTCATTGGTCTCCATTTTCCAGTG AGGCAGACCTTCTTCGTCAGTTTAAGCTTATGTCAGATCATGGGACACGCATAATTATATACAATCTTTGGGAGGATGACCAGGGAATGTTGGAACTTGA TTTTGACTCTGATCCTCATGATATCCAACTAAGAGGCGTCAATCGAGATGAGAAGCATATACAAATGGCAAAAGAGTTTCCCAACTCCAGACACTTCCTT ACTTATAGGCATTCATTAAGGAATTATACATCAATTCTCTATCTCAGACTGCCTCCCAGCTTTCGAATCATTCTACGTGGAAAAGATGTTGAGCACCACA ATATAGTGAATGATATGATGCTATCTCAAGAGATAACGTACCGGCCACAACCTGGTGCTGACAGTGTTCCAAAAGACACAAATATGACTGCTGTCGTCAC CATTGGCTTTGTGAAGGATGCAAAGCATCACATCGATGTTCAAGGGTTCAATGTTTACCACAAAAATCGACTAATCAAGCCATTTTGGAGGCTTTGGAAT GCAGCAGGAAGTGATGGACGTGGAGTTATTGGTGTGTTGGAAGCTAATTTTATTGAGCCAGCTCATGATAAGCAAGGATTTGAACGCACAACAGTTCTTG CAAGACTTGAAGCTCGATTAGTACAAATGCAAAAGCATTACTGGTGCACTTACTGCCACAAAATTGGTTATGCTCCAAGGCGAAATAAGAAACTGATAAA TGAGTCAGATAGAGAGAATTCTCCTGACGATCTACCACCCACATCTTCTCAATCTAAAAAGAAGTATACTTCTTTGAGCAGTAAGATATCCCCCTCACAT TCTAACCGTGGGTATGTTAGTGGAAATGCCTTCAATAAAGGGAATATTAGAACAAAGACCCCAACCAAATTGGGAAAAAACACTGTATCTTCAGGACCTT CACCTCCTGCTCAAGATGAGAGTAGTGAAGATGATGAGCATGTTGCTCTTCCTATGAGAGAAGCAAATGGGAGCGCTCAAGAGACCACTCCTACTAACAA GTCTTTTGACAAAAATGGGTTGCCTAAAACGTGGTCGTCTTCATACTTGGAAGATTCTGGATCTCAACAAGATTGCATGTCTGGAGGGGCAACTGTTCAA ACAGGCACAAGATCCCAACCAAAGGTGGGTGATGTTGATAAGAGGGATCATGCCCTTCCGGAATCTGATATGCATGTCCTTGCTCATTTGAAACAAGAGA ATCGTGAGCTAAAAGAAAGATTACAGAAACTGGAAGGAGAGACTCGAGGGAAGTACATGAGTGGTTTTCAGTGTGAGAAGTGTAAATCACTTGAGATACA GTTGCAGGAAGCACAGCAAAAACTTGAAGAATTGAACAAGGAACAGGAAAGTCTGATTGATATATTCTCAGAGGAGAGGGACCGACGAGACCAGGAGGAG GAGAGTTTGAGAAAGAAGCTAAAGGATGCATCAAATACTATTCAGGAGTTGCTCGACAAGGTCAGGCTGTTGGAGAAAAGATGA
AA sequence Show only first row Show all	>Potri.012G102800.2 pacid=42783647 polypeptide=Potri.012G102800.2.p locus=Potri.012G102800 ID=Potri.012G102800.2.v4.1 annot-version=v4.1 MGGNVKREILEPLPNRRNAAVSGVPPAVIELSSSSESSSGSGSESESEMDGNSVISKRPRGSSGVNGGTEKKKRRKRKRNFEDLGVVLPLGFLAPITPPP DSETPSEAEMMAVESTESRRVSLTGQSSKQFWKAGDYEGAPRANWDSSFGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEFGNGARFVNIDMVE SKKDQSRMLLIEDNGGGMDPDKLRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCQGKDGKFPTQSIGLLSYTFLRSTGKEDIVVPMLDY ERKGREWSRMGRSSTGDWNRNVETIVHWSPFSSEADLLRQFKLMSDHGTRIIIYNLWEDDQGMLELDFDSDPHDIQLRGVNRDEKHIQMAKEFPNSRHFL TYRHSLRNYTSILYLRLPPSFRIILRGKDVEHHNIVNDMMLSQEITYRPQPGADSVPKDTNMTAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWN AAGSDGRGVIGVLEANFIEPAHDKQGFERTTVLARLEARLVQMQKHYWCTYCHKIGYAPRRNKKLINESDRENSPDDLPPTSSQSKKKYTSLSSKISPSH SNRGYVSGNAFNKGNIRTKTPTKLGKNTVSSGPSPPAQDESSEDDEHVALPMREANGSAQETTPTNKSFDKNGLPKTWSSSYLEDSGSQQDCMSGGATVQ TGTRSQPKVGDVDKRDHALPESDMHVLAHLKQENRELKERLQKLEGETRGKYMSGFQCEKCKSLEIQLQEAQQKLEELNKEQESLIDIFSEERDRRDQEE ESLRKKLKDASNTIQELLDKVRLLEKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	0	1
AT1G79380			Ca(2)-dependent phospholipid-b...		Potri.008G081300 [exp]	1.41	0.8865
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	2.44	0.8580
AT2G36360			Galactose oxidase/kelch repeat...		Potri.008G024700 [exp]	2.82	0.8718
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G239802 [exp]	3.00	0.8761
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.008G188150 [exp]	5.65	0.8040
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.001G442900 [exp]	6.00	0.8454
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060210 [exp]	8.66	0.7697
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.009G131700 [exp]	11.74	0.8148
					Potri.004G093250 [exp]	12.64	0.8599
AT5G51290			Diacylglycerol kinase family p...		Potri.004G233300 [exp]	12.68	0.8566

Compare expression of checked genes

Potri.012G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.