Plant FIBer expression Database

Potri.012G103000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48730 530 / 0 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
AT5G63570 526 / 0 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1)
AT1G80600 55 / 5e-08 WIN1 HOPW1-1-interacting 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G101100
[exp]
639 / 0 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
Potri.017G053500
[exp]
53 / 2e-07 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1)
Potri.005G095800
[exp]
45 / 7e-05 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029064
[exp]
535 / 0 AT3G48730 778 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
Lus10034205
[exp]
533 / 0 AT3G48730 774 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
Lus10030551
[exp]
503 / 7e-178 AT3G48730 764 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
Lus10008025
[exp]
44 / 0.0003 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1)
Lus10031196
[exp]
43 / 0.0004 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00202 Aminotran_3 Aminotransferase class-III
Representative CDS sequence
>Potri.012G103000.2 pacid=42784268 polypeptide=Potri.012G103002.1.p locus=Potri.012G103000 ID=Potri.012G103000.2.v4.1 annot-version=v4.1
ATGGCTTCGATAATTACAGGTGATAGTGTTGGTTTAGGACTTTCATGTTCCGCAACAAGAAAGCTATATCAGACAAGAAATCCTTCTTCATCAAGGTTGT
CCTTTTGCAGCATTAAAATGGCTGTCTCTGAAATGATGCCAGGGGGTGTGAATTCACCTGTACGTGCTTTTAAATCTGTTGGTGGACAACCTGTTGTGTT
TGATTCTGTACTTGCAGCCTTGGCTGAAACAATGAAGAAAGGGACCAGCTTTGGTGCCCCATGTCTTCTAGAGAATGTTTTGGCAGAGATGGTGATCAAA
GCAGTTCCAAGCATAGAAATGGTTCGGTTTGTTAACTCAGGCACAGAAGCATGTATGGGTTTCGAGGGCTGTTACCATGGCCATGCCGATCCATTCCTTG
TCAAGGCAGGTAGTGGTGTTGCAACCCTTGGGCTCCCTGACTCCCCTGGTGTCCCCAGAGCAGCAACCTATGAGACTCTAACAGCCCCCTATAACGACAT
TGCTCCCATGGAAAATCTTTTTGAGAATAACGAAGGAGAGATCTGTGCAGTAATCCTTGAACCTTTTGTGGGAAATGCTGGTTTCATTCCCCCTAAACCT
GAATTTCTCAATGCCCTTCGCAAGATAACCAAAGAAAATAATGCTCTTCTAATTTTCGATGAAGTTATGGCTAGATTCCGTTTGTGCGGAGCCCAGGAGT
ATTTTGGCACAACTCCTGATTTAACAACACTAGGGAAGATCATAGGTGGTGGTCTGCCTGTTGGTGCATATGGTGGGAGAAGGGAGATTGTGGAGATGGT
TGCACCTGCTGGGCCAGTGTATCAGGCTGGGACCTTGACCGCACTGGATAAGATCACCAGTGAACTTGTTCAAGGCATTATTGATGCTGGCAAGAAAACT
GAGCATGCAATTTGTGGTGGATATATACGTGGAATGTTTGGGTTTTTCTTCACGGAGGGGCCTGTTTACAACTTCGCTGATGCAAAGAAAAGTGACACAG
CAAAGTTTGCCAGATTTTTTCAAGGAATGCTGAGGGAAGGTGTATGCTTTGCACCTTCACAATTCGAAGCGGGGTTTACAAGCCTGGCACATACTGATGA
AGATATTCAAAAGACAATAGCAGCAGCTGAGAAAGTTCTCCGGCAGATCTAG
AA sequence
>Potri.012G103000.2 pacid=42784268 polypeptide=Potri.012G103002.1.p locus=Potri.012G103000 ID=Potri.012G103000.2.v4.1 annot-version=v4.1
MASIITGDSVGLGLSCSATRKLYQTRNPSSSRLSFCSIKMAVSEMMPGGVNSPVRAFKSVGGQPVVFDSVLAALAETMKKGTSFGAPCLLENVLAEMVIK
AVPSIEMVRFVNSGTEACMGFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPRAATYETLTAPYNDIAPMENLFENNEGEICAVILEPFVGNAGFIPPKP
EFLNALRKITKENNALLIFDEVMARFRLCGAQEYFGTTPDLTTLGKIIGGGLPVGAYGGRREIVEMVAPAGPVYQAGTLTALDKITSELVQGIIDAGKKT
EHAICGGYIRGMFGFFFTEGPVYNFADAKKSDTAKFARFFQGMLREGVCFAPSQFEAGFTSLAHTDEDIQKTIAAAEKVLRQI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48730 GSA2 glutamate-1-semialdehyde 2,1-a... Potri.012G103000
[exp]
0 1
AT3G24860 Trihelix Homeodomain-like superfamily p... Potri.002G243300
[exp]
27.34 0.5954
AT1G53530 Peptidase S24/S26A/S26B/S26C f... Potri.001G380400
[exp]
31.89 0.6031
AT3G13570 SCL30A, At-SCL3... SC35-like splicing factor 30A ... Potri.001G006400
[exp]
38.40 0.5804 Pt-SCL33.2
AT3G18960 B3 AP2/B3-like transcriptional fa... Potri.012G093200
[exp]
38.49 0.6066
Potri.008G141600
[exp]
48.92 0.5860
AT5G15400 U-box domain-containing protei... Potri.004G121200
[exp]
52.99 0.5934
AT5G15270 RNA-binding KH domain-containi... Potri.014G045000
[exp]
61.61 0.5803
AT1G01920 SET domain-containing protein ... Potri.014G077700
[exp]
76.97 0.5436
AT5G44150 unknown protein Potri.017G017200
[exp]
95.39 0.5596
AT3G09370 MYB ATMYB3R-3, ATMY... myb domain protein 3R3, myb do... Potri.003G123800
[exp]
109.08 0.5395

Potri.012G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.