Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 508 / 5e-179 DHHC-type zinc finger family protein (.1) AT3G48760 483 / 1e-168 DHHC-type zinc finger family protein (.1) AT5G41060 451 / 4e-157 DHHC-type zinc finger family protein (.1.2) AT4G24630 372 / 5e-126 DHHC-type zinc finger family protein (.1) AT5G50020 346 / 2e-115 DHHC-type zinc finger family protein (.1.2) AT3G56930 340 / 1e-112 DHHC-type zinc finger family protein (.1.2) AT5G05070 313 / 8e-103 DHHC-type zinc finger family protein (.1) AT2G40990 287 / 5e-93 DHHC-type zinc finger family protein (.1) AT3G56920 275 / 5e-89 DHHC-type zinc finger family protein (.1) AT3G51390 86 / 4e-18 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101900 [exp] 753 / 0 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 539 / 0 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 527 / 0 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 389 / 2e-132 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 387 / 2e-131 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 380 / 1e-128 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 378 / 3e-128 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 328 / 7e-110 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 332 / 6e-109 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035177 [exp] 519 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 519 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 495 / 2e-173 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 491 / 1e-171 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 371 / 3e-125 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 366 / 2e-122 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 317 / 3e-105 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 314 / 9e-103 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 307 / 1e-100 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 306 / 3e-100 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.012G103300.1 pacid=42784047 polypeptide=Potri.012G103300.1.p locus=Potri.012G103300 ID=Potri.012G103300.1.v4.1 annot-version=v4.1 ATGAGAGACATGTATGTGGTCCCACCTCCTCCTGATCCGATTGCCGGAGCTACGGTGGACGCTTCTGTTACTGGTGACGATGGGGAGGATCAGCTCAGGA CTTACCAGGCATGGAAAGGCAGTAATATTTTCTTGCTTCAGGGGAGGCTTATTTTTGGACCAGATGCGAGATCTCTTCTGTTAACCATATTTCTTATTGT GGTTCCTGCTGCTATTTTCTGTGTCTTTGTAGCAAGAAAGCTGAAAGATGATTTTTCTCATCACTTGGGAATATCAATATTAGTCGTTGCTATCGTTCTG ACATTACTAGATTTAACCCTTCTTCTACTAACATCAGCAAGGGATCCTGGTATAATACCTCGTAATGCTCATCCTCCAGAGCCAGAAGGTTATGACTGGC AAACTCCACTTACTCCTGGCCAAACCCCACCTTTTCGTTTGCCACGCACAAAGGATGTTATCATCAATGGGATGACTGTGAAGACCAAGTACTGTGATAC CTGCATGCTTTATAGGCCGCCACGCTGCTCTCACTGTTCCATATGCAATAACTGTGTGGAAAGATTTGATCATCACTGCCCTTGGGTTGGTCAGTGCATT GGATTGCGGAACTACCGGTTCTTCGTCATGTTTGTTTTCACCGAAACAATTCTTTGCATATATGTACATGCATTTTGCTGGGTCTACATTACAAGGATCA TGAATAGTGAGGAGACATCAATTTGGAAAGCAATGTCCAAAGCTCCTGCTTCTATTGCACTAGTAGTTTACACCTTTATTTCAGTTTGGTTTGTTGGTGG TCTTACTGTGTTCCATTCATATCTCATCAGTAAAAACCAGTCTACTTATGAGAACTTTAGATACCGGTATGATGGGCTAGCCAACCCATTTGACAAAGGT TTGATTGAGAACTTCATGGAGATATTTTGCTCTAGCATTCATCCATCTAAGAACAATTTCAGGGCAAAAGTTCCAAAGGAAAACACCATTCCACCTAGAA TGGTAGCTAGTAGTTTTGTCAGTTCAGGGGTGGGAAAATCTGCTGGTGATGTAGAGATGGGGAGGAAGCCAGTCTGGGATGAGGCTGCAGGAGATGCGGA TGATTATGATGGAACAATAAGAAATGATGACAGTCTACATGAGGATCGTGGATTGACTGATGTCTCACCAGATTTAAGCAGGATCCTTCCCCCACAGGGT ATGGAAGGGCGTAGCGTCATGCATTCCAGACGACCAAGTTTGGGGAGAAAAAGTGGCAGTTGGGATATATCACCTGATCTTGCTTCAGCAGCTGGAATGG GGGAATCAGAGCGGACGGCTTGTGGCACTGGTGACAACTTGACATCAGATGCTCAGCAGTCTAAGAGGCATACAAAGTTGTAA
AA sequence Show only first row Show all	>Potri.012G103300.1 pacid=42784047 polypeptide=Potri.012G103300.1.p locus=Potri.012G103300 ID=Potri.012G103300.1.v4.1 annot-version=v4.1 MRDMYVVPPPPDPIAGATVDASVTGDDGEDQLRTYQAWKGSNIFLLQGRLIFGPDARSLLLTIFLIVVPAAIFCVFVARKLKDDFSHHLGISILVVAIVL TLLDLTLLLLTSARDPGIIPRNAHPPEPEGYDWQTPLTPGQTPPFRLPRTKDVIINGMTVKTKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCI GLRNYRFFVMFVFTETILCIYVHAFCWVYITRIMNSEETSIWKAMSKAPASIALVVYTFISVWFVGGLTVFHSYLISKNQSTYENFRYRYDGLANPFDKG LIENFMEIFCSSIHPSKNNFRAKVPKENTIPPRMVASSFVSSGVGKSAGDVEMGRKPVWDEAAGDADDYDGTIRNDDSLHEDRGLTDVSPDLSRILPPQG MEGRSVMHSRRPSLGRKSGSWDISPDLASAAGMGESERTACGTGDNLTSDAQQSKRHTKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	0	1
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	2.23	0.7739
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.001G273000 [exp]	2.82	0.6606
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.003G134500 [exp]	4.89	0.6939
					Potri.010G210400 [exp]	4.89	0.7306
AT3G07760			Sterile alpha motif (SAM) doma...		Potri.014G165300 [exp]	6.00	0.6524
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134800 [exp]	7.07	0.6928
AT3G22970			Protein of unknown function (D...		Potri.010G080600 [exp]	13.07	0.6944
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.010G208900 [exp]	13.07	0.6283	Pt-RAB1.10
AT5G13660			unknown protein		Potri.010G209300 [exp]	14.42	0.6488
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Potri.007G046500 [exp]	21.90	0.6048

Compare expression of checked genes

Potri.012G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.