Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48770 1783 / 0 DNA binding;ATP binding (.1) AT3G28020 174 / 1e-48 unknown protein AT4G13750 141 / 3e-33 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G102200 [exp] 2839 / 0 AT3G48770 1833 / 0.0 DNA binding;ATP binding (.1) Potri.015G102700 [exp] 2826 / 0 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1) Potri.015G103100 [exp] 2746 / 0 AT3G48770 1796 / 0.0 DNA binding;ATP binding (.1) Potri.015G103000 [exp] 2318 / 0 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1) Potri.015G102401 [exp] 894 / 0 AT3G48770 771 / 0.0 DNA binding;ATP binding (.1) Potri.015G102301 [exp] 706 / 0 AT3G48770 389 / 1e-120 DNA binding;ATP binding (.1) Potri.001G317200 [exp] 159 / 1e-38 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G102501 [exp] 81 / 6e-18 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004567 [exp] 1922 / 0 AT3G48770 1691 / 0.0 DNA binding;ATP binding (.1) Lus10032551 [exp] 164 / 2e-43 AT3G48770 145 / 9e-38 DNA binding;ATP binding (.1) Lus10016661 [exp] 150 / 5e-36 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G103700.1 pacid=42782543 polypeptide=Potri.012G103700.1.p locus=Potri.012G103700 ID=Potri.012G103700.1.v4.1 annot-version=v4.1 ATGGAAACTCCGAAAGAACACATAGAGCACATAAGAGAAACAACATTCTCAATAGGAAGAGAAAAGAACCCCTTGGCTCCCATGCTTGATCAGGCTGTCA AGTATCTCTCCGCTGAGCTTTACGCCAAAGATGTTCACTTTCTCATGGAGCTCATTCAGAATGCTGAAGACAATGAATACTTGGAGGGGGTGGATCCTTC ACTTGAGTTTGTTATAACATCTCGTGATATAACAAACACCGGTGCACCTGCTACTTTGCTCATGTTCAATAATGAGAAGGGCTTTTCTGCCAAAAATATT GATTCAATTTGCAGCGTTGGAAATTCCACTAAGAAAGGGAATCGAAAGCGCGGTTATATTGGGGAAAAAGGGATTGGATTCAAGAGTGTGTTTCTTATAA CTGCGCAGCCTTACATATTCAGCAATGGGTACCAGATACGATTCAATGAAAATCCCTGCCCACACTGCAATCTTGGATACATAGTTCCTGAATGGGTTCA TGAGAGTCCATCTCTGTCTGACATCAAACAAATTTATGGTTCCACTTCTATGCTTCCGACTACCACGTTGATTTTACCTCTGAAGCCTGATAAGGTGACA GCTGTGAAGCAGCAGCTGTCAAGTGTTCATCCCGAAGTCCTGCTGTTCCTTTCAAAGATAAAGCGCCTTTCTGTCAGGGAAGATAATGAGGATCCAAGTC TCAACACTGTTAGTGCAATAGCTATTACCAAAGAGACTAATTTTGTGACAAGGAAAAACATTGATGCCGAGTCCTACACACTCCATCTGTCTGCAGAGGA GAATGATGATGAATTTGCAAAAGGATGCAGCTACTACTTGTGGAAGCAGAAATTTCCTGTCAGGCAGGAAAACAGAGTCGACAGGAGAATGGAAGTGGAG GATTGGGTGATCACTTTGGCTTTTCCTAATGGAGAGCGCCTTCTTAGAGGAATGAAGTACTCTCCTGGAATCTATGCATTTCTTCCAACCGAGATGGTGA GCAACTTTCCCTTCATAATCCAAGCAGATTTTATTCTAGCATCATCAAGGGAAACAATACAATGGGACAACATATGGAACCAAGGAATCCTTGATTGTGT TCCCTTTGCTTTTGTCAATGCATTAGTCTCATTAATCAAAACAGTAGATGATGCTCCAGTATCTAGTTTGCCTCCAATGTTCAAGTTCTTGCCAGTCCAC AGCTCCCCCTTCGAAAAGTTGAATATAGTGAGGGAATCGATTAAATCAAAGCTGGCTGAAGAGGATATTGTTCCAAGTGAGTCATACACAGCGCAAAAGT TCTTTCATAAACCGCGCCAAGTTTGCCGATTAATGCCTGCTTTCTGGAACATACTGAAGATGGCAAGGGAGCGAGGAGTGAGCTTGCACAATCTTTCATC CCATGGTTGCTATGTTCTGAATTTTTCTTTTGATAAACCAGAGTATGATCACATACTGGATTTCTTGAGGGTGGAACCGGTAAGCAGTGAGTGGTATGTA AAGTGCATCCAAGGTTCTCATATTGTAATGGGAGTCTCAGAGGAAACATACCTGGAGCTTCTTCACTTCCTTGCTGTTAATTGGCATTCCTTGTTTTACC ACACAGACATGGGGAGCATTCCACTCATTAAATATGTGGGTGTTGATGGGAGCGTGTCTTTGTGCACCGTTAATGAATCTGCTCAGTGGTATGGTAAAAC TCTGTGCCTTTCACTTCTGTCATCTCATATCTCATGGTTGATTGATTGGAACAGGGAATTCCGATGCATGGCAAATCATTTTTTTATGCCAAGAAGTACA CAAGAAGCTATCCGGTCATCATCTAGCAAAAATGAGGTGTTAGAATGGCTTGGAGATCCTGTTAAAGTTACTGCTTTAAGCGTAAATGATTATGCAGTTC TCTGCGGAAATCAAGTCAGTAGTGACCGGAAGCTTGTCATTGCCTATGCTCATTTCTTATATCATTCATTCTCCAATAACTATCTATCAGGCAGGGAAGT TGCCCCTTTATGTGATAAAATGCCACTTGTTGATAGCTATGGTCATGTGATTAAAGCAAGGAATGGGGTTCTTGTCCCGGCTCCTGAAAGCAAATGGGTG CAATTGATTGGTTATAATCCTTGGAGGGGAGAAAGCTACGTTGAGTTAGGAGAAGACTACTTGCATCCTGGATATTTTGCTGGCACAAGCACAGAGGGAA AGAAACTCTTGGAGTTCCTTAAAGCTTTTGTTAAAGCTTCTGATATTCCTCACATACCTCCCCCGATTGCTGGAATACCTACTGCGTCAACACCACTTAC CAAACAAAATGCATTTCTGCTGTTGGACTGGATTCGTGAGCTGAAACGGAGTGGAATTTCCATTCCAGCAACGTTCATGAATTGCATAAAGGAGGGTAGC TGGCTGAAAATTACTATGAATGGCTCTCCTGGTTACAAGCCACCATCACAGTCATTCCTACTTGGTTCAGTTAACAGAAGCTCAGACTGGGGAAACATTT TGCAGAATGGATCCGTGCTTGTCGATATTCCGTTGATAGATCAAGGTTTTTATGGTTATAAAATTAACGAGTACAGAGAGGAGCTAATGACAGTCGGAGT CATGTTCGAGTATGGAGAGGCATGTGAATTTATCGGGAATCGTCTCATGTCTTTGGCAGCTTCATCTACCTTGACTAAAAGCAATGTGATTTCCATACTG AAATTCATCAGATTTTTGACGCTAAATCTTCTTCCTCCAGATAAATTCATTCTCAGAATTAAAGAAGGAAGGTGGCTAAAGACAGGTGGGGGATACAGGT CTCCAGTTGGTTCTGTTCTATATGATCAGGAGTGGACAATTGCGAGGCAAATTAGTGACATCCCTTTTATTGATCAAGATTACTATGGCAAAGACATCCT TGTTTTCAAATCAGAACTCCAGTTACTGGGCGTCGCAATTGGCTTCAGCGGAAGTTATCAATTGGTTGCTGATTACTTAAAATCGCCTTTATGGTTATCT TATCTGACAATGGAGGCGTTTCTTCTGGTTTTAGATTGCATGCGTCATTCTAGTTCTGCTGGCAAGCTAGTTATCGCACTGAAAAGCACAAAATGCTTAA ACACAACCTTGGGCTACAGATATCCTGATGACTGTTTCTTGTTTCATCCTGAATGGGGTTGCCTTCTAAATGTTTTTGGTGGTTTTCCATTGGTTGATAG TAATTTCTATGGAAGCAACATCATCTCTTACAAAAAGGAGTTGAAGGACCTGGGAGTAAGAGTAGACTTCGAGGATGCTGTCGAAGTGTTTGTTGATACT TTCAGGAAGCAGGCATCTTCCATGACAAAGGAAAGTGTATTTTCATTCATATCATGCTACAGAAAGCTGAAGGGAACTCCACACAAATTTCCTTCAGACC TTAAGAAGTGCATCCGTGAGGAAAATTGGCTGCGGACCCGACTCGGTGATTATAAATCTCCAAGCAACTGTATCCTGTTTAGTCCTGAGTGGAAGTCAAT TTATCCAATTACTCGCCTTCCCTTTATTGATGACAGTGACAAATATTATGGGAATGACATTCATGAATATCAGAAAGAGCTGAAGAGTATGGGGGTCATT GTTGAATTTAAAGCTGGTGTGAAGTTTGTCGCTGCTGGTCTTCGTTTTCCCCAAAATCCATGCCACATAGCTCGTGTGAATGTGCTTTCATTGCTGGAAT GCATCCGTGCTTTATTGCAAGAAAAGGACTACTCCTTTCCTGAAATATTTCTGAAAAATATTTCTCAGGGATGGTTAAAGACCCATGCTGGTTTCAGGTC TCCGGGCAACTGCTGTTTGTTCAATTCCCAGTGGAGTTCATACGTGAAGCCTACTGATGGACCATTCATTGATGAAGACTTTTATGGTTCTAACATCAAG TTGTATGGAAAAGAGCTCAGTGCAATAGGAGTTCATTTAGAGGTAGAAAAGGCGTGTTCATTGCTTGCCAGTCATCTTGATTCCCATTCTGAGTTTTGCA CTATAGTTCGAGTATATGATTTCCTGAGACAACATGAGTGGAAGCCAGATGGTGATGCAACCAGAAAGATTTGGATTCCAGATGGACTTGAGAATGGAAT GTGGGTTAACCCAGAAGAATGTGTTCTGCATGACAAAGATGGTCTCTTTGGTCTTCAGCTGAATGTATTGGAGAAACATTATGAGCCAGAATTACTTCTT TTCTTTTCCAGTTCATTCAAGGTTAGATCCAATCCTTCATTTGATGATTACTGTAAGCTTTGGAAGGTTTGGGAAAGTTTAGGACGCCCATTGACACATG CTGAGTGCTGTGCATTTTGGAAGTGTGTTATGACGCATATGAGCTCAAAGACAGAGAGAACTCTCGCCGATGACTTGGTAAAGCTACCTGTTATTTTGGG CTCTGGTGAAATAGTGTTGTTCAGGAAGGCTGACGTTTTTATTGCTGATGACCTTCTACTGAAGGACCTTTTCGAAAGGTTTTCATCACGCCCAATATTT GTCTGGTGTCCCCAGCCAAACTTGCCTTCTTTACCTCGAACTAGGTTGCTTGATGTATACAGGAAAATTGGGGTTCGCACAATATCTGAGTCAGTGCAAA AGGAGGAATTATCATTGGCAGATGGTGTGGAATTTAGTCAGATGAATCCGAGGAATGCCATGATTGGAAAAGAGCTGGTGAGACTGATTCTTGGCTTTCT AGCAGATCCTTCTCTTGATATTGAAGCAACAAAAAGGCATGGAGCTGTCCAGTGCCTCTTGAACCTGAAGGTCCTGGAAACTATGGAGGCAATTGCTGTA AGCTATAGTTTACCGCTTTCTGATGGGAAAATTCTGAAGGTGGAGAACGCACGCAGTATGATTCGCTGGGATAAGGAGAGTTCAAAGTTTCTCACACAGA AGATGGATGAAGCTGGTGGCCAGAAAAATCTTATTGAATTTGCAACCATTTTTTCTGAAGTAATAGCTCGGGGGGTGCTATGGGATAAAGAAGATCAAAT AAAAGCACTCTCCGAGCTGATCAGGTTGGCTTTCGTGCTGAATTTTGATGAACAAGCTGTTCAGTTCTTGATGAAATCCAATAATCTTCAAACTTTTCTG GAGGATGAGGAGTTCCTTGCTGCTGCTTTCCCTTCTGTTTAG
AA sequence Show only first row Show all	>Potri.012G103700.1 pacid=42782543 polypeptide=Potri.012G103700.1.p locus=Potri.012G103700 ID=Potri.012G103700.1.v4.1 annot-version=v4.1 METPKEHIEHIRETTFSIGREKNPLAPMLDQAVKYLSAELYAKDVHFLMELIQNAEDNEYLEGVDPSLEFVITSRDITNTGAPATLLMFNNEKGFSAKNI DSICSVGNSTKKGNRKRGYIGEKGIGFKSVFLITAQPYIFSNGYQIRFNENPCPHCNLGYIVPEWVHESPSLSDIKQIYGSTSMLPTTTLILPLKPDKVT AVKQQLSSVHPEVLLFLSKIKRLSVREDNEDPSLNTVSAIAITKETNFVTRKNIDAESYTLHLSAEENDDEFAKGCSYYLWKQKFPVRQENRVDRRMEVE DWVITLAFPNGERLLRGMKYSPGIYAFLPTEMVSNFPFIIQADFILASSRETIQWDNIWNQGILDCVPFAFVNALVSLIKTVDDAPVSSLPPMFKFLPVH SSPFEKLNIVRESIKSKLAEEDIVPSESYTAQKFFHKPRQVCRLMPAFWNILKMARERGVSLHNLSSHGCYVLNFSFDKPEYDHILDFLRVEPVSSEWYV KCIQGSHIVMGVSEETYLELLHFLAVNWHSLFYHTDMGSIPLIKYVGVDGSVSLCTVNESAQWYGKTLCLSLLSSHISWLIDWNREFRCMANHFFMPRST QEAIRSSSSKNEVLEWLGDPVKVTALSVNDYAVLCGNQVSSDRKLVIAYAHFLYHSFSNNYLSGREVAPLCDKMPLVDSYGHVIKARNGVLVPAPESKWV QLIGYNPWRGESYVELGEDYLHPGYFAGTSTEGKKLLEFLKAFVKASDIPHIPPPIAGIPTASTPLTKQNAFLLLDWIRELKRSGISIPATFMNCIKEGS WLKITMNGSPGYKPPSQSFLLGSVNRSSDWGNILQNGSVLVDIPLIDQGFYGYKINEYREELMTVGVMFEYGEACEFIGNRLMSLAASSTLTKSNVISIL KFIRFLTLNLLPPDKFILRIKEGRWLKTGGGYRSPVGSVLYDQEWTIARQISDIPFIDQDYYGKDILVFKSELQLLGVAIGFSGSYQLVADYLKSPLWLS YLTMEAFLLVLDCMRHSSSAGKLVIALKSTKCLNTTLGYRYPDDCFLFHPEWGCLLNVFGGFPLVDSNFYGSNIISYKKELKDLGVRVDFEDAVEVFVDT FRKQASSMTKESVFSFISCYRKLKGTPHKFPSDLKKCIREENWLRTRLGDYKSPSNCILFSPEWKSIYPITRLPFIDDSDKYYGNDIHEYQKELKSMGVI VEFKAGVKFVAAGLRFPQNPCHIARVNVLSLLECIRALLQEKDYSFPEIFLKNISQGWLKTHAGFRSPGNCCLFNSQWSSYVKPTDGPFIDEDFYGSNIK LYGKELSAIGVHLEVEKACSLLASHLDSHSEFCTIVRVYDFLRQHEWKPDGDATRKIWIPDGLENGMWVNPEECVLHDKDGLFGLQLNVLEKHYEPELLL FFSSSFKVRSNPSFDDYCKLWKVWESLGRPLTHAECCAFWKCVMTHMSSKTERTLADDLVKLPVILGSGEIVLFRKADVFIADDLLLKDLFERFSSRPIF VWCPQPNLPSLPRTRLLDVYRKIGVRTISESVQKEELSLADGVEFSQMNPRNAMIGKELVRLILGFLADPSLDIEATKRHGAVQCLLNLKVLETMEAIAV SYSLPLSDGKILKVENARSMIRWDKESSKFLTQKMDEAGGQKNLIEFATIFSEVIARGVLWDKEDQIKALSELIRLAFVLNFDEQAVQFLMKSNNLQTFL EDEEFLAAAFPSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48770			DNA binding;ATP binding (.1)		Potri.012G103700 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116090 [exp]	5.74	0.8297
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.016G092600 [exp]	7.34	0.8532
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011200 [exp]	8.00	0.8186
AT2G44930			Plant protein of unknown funct...		Potri.014G053900 [exp]	8.12	0.7958
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	9.27	0.8567
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.019G061550 [exp]	18.43	0.8128
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112600 [exp]	19.97	0.8091
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108200 [exp]	22.64	0.7645
AT5G15780			Pollen Ole e 1 allergen and ex...		Potri.017G100600 [exp]	23.49	0.7557
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060042 [exp]	27.03	0.7661

Compare expression of checked genes

Potri.012G103700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.