Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50860 710 / 0 Protein kinase superfamily protein (.1) AT1G54610 635 / 0 Protein kinase superfamily protein (.1.2.3) AT1G53050 597 / 0 Protein kinase superfamily protein (.1) AT1G03740 548 / 0 Protein kinase superfamily protein (.1.2) AT1G09600 544 / 0 Protein kinase superfamily protein (.1) AT3G05050 544 / 0 Protein kinase superfamily protein (.1) AT1G71530 542 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 535 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 526 / 1e-180 Protein kinase superfamily protein (.1.2) AT1G33770 524 / 1e-180 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103300 [exp] 913 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 702 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 677 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 675 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 612 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 610 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 570 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 567 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 560 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012805 [exp] 694 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 681 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 668 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 668 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 608 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 606 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 565 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 549 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10009464 [exp] 547 / 0 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031651 [exp] 546 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.012G103900.1 pacid=42783339 polypeptide=Potri.012G103900.1.p locus=Potri.012G103900 ID=Potri.012G103900.1.v4.1 annot-version=v4.1 ATGGGCTGTGTTCTCGGAAAGTACACCGCCAGGCGTCGCCAGAGTCGTGGAGGATCCTCCGACCGTGGCCAGAGCTCCGATGAACAAACCGTCACCGTCA CCGAAGCCGTTAACGCCGCAGTGAGGGTTAAGAGGGAGGAAACAGCAACGATAACTTCAACATCAACAACAACGCAGAGGCAGAAGGCAACAAGGGACAC CGGCGATTTCCAGGTGGAGGATGTTCAGGGGGGGACGGAACGCCGGAGGCCACGCCCCGAAGCTAGTCTGAAGTGCCAGCAAGGGTGGCCGTCGTGGTTA ATGGCGGTCGCCGGTGATGCCATCGGCGATTGGACACCTCGCCGAGCTAACACGTTTGAGAAACTTGATAAGATTGGGCAAGGGACGTATAGCAATGTGT ATAAAGCAAGGGATTTAATAACAGGAAAGATAGTGGCTTTAAAGAAAGTGAGGTTTGATAATTTAGAGCCAGAGAGTGTTAAATTTATGGCAAGAGAGAT TCTTGTTTTAAGAAGATTAGATCATCCAAACGTGCTTAAGATTGAAGGTTTGGTTACGTCAAGAATGTCATGTAGTCTGTACTTGGTTTTTGAGTACATG GAACATGATCTTGCCGGGCTGGTGGCACGCCAAGGGGTCAAGTTCACTGAGCCTCAGGTCAAGTGCTACATGACGCAGTTGTTATCTGGGCTTGAGCATT GCCACAACCATCGTGTTTTGCACCGGGATATCAAGGGTTCCAATCTGCTTATTAACAATGATGGAGTTCTAAAAATTGCTGATTTTGGACTGGCTACTTT CTATGATCCAGATCGCAAGGTTCCAATGACCAGTCGAGTTGTCACCCTCTGGTACCGCCCCCCTGAACTTCTTCTTGGGGCCACTAGTTATGGTGTTAGT GTTGACCTCTGGAGTGCTGGATGCATTTTGGCTGAGCTACTTGCTGGAAAGCCAATAATGCCTGGACGGACAGAGGTCGAACAACTACATAAGATATTTA AGCTATGTGGCTCTCCATCCGAGGAATATTGGAAGAAATCCAAATTGCCAAATGCTACACTTTTTAAACCACAGCAACCATACAAACGATGTATAGCAGA AACCTTCAAGGACTTCCCCGCTTCTTCTCTGCCTTTAATTGAAACTCTTCTTTCGATAGATCCTGATGATCGAGTCACTGCCACTGCAGCTCTAAATAGT GAATTCTTCACCACCGAACCTTATGCGTGTGAGCCGTCGAGTTTGCCTAAGTATCCGCCCAGTAAAGAATTGGATGTGAAGTTGAGAGATGAAGAAGCAA GAAGGCAAAGGGGCCTTAGTGGAAAAGCTAATGCTGTTGATGGTGCCAGAAGAGTAAGAATACGTGATCGGCCTGGTCGGGCAATCCCAGCTCCAGAGGC CAATGCAGAGAATCCAGCAAACTTAGATAGATGGAGAGCCATGACACAAGCAAACGCTAAGAGCAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGCA GCAGTTGGACATCCCATGGACGCATCACATAAAGGTGGCCCTGTTTCATTTGGTCCATCAGATTCTTCCTTTAGTTCATCGATATTCGATTCAAAATCAT CATCTATTAAAAGTGCTGGAGCCATTGGAGGTCCTTCCAGGAGAATAAAAACCAATAAAGAAGACCTCCAGATGGCTCCATCTCGAAAATTTATCCGTCC GTTTAATCCATCATCAGTCGGGCTATCAATGAATCAGTTATTCAAGGGTAAATCGGAGGTTTTTGGCAATCGGAGGTAG
AA sequence Show only first row Show all	>Potri.012G103900.1 pacid=42783339 polypeptide=Potri.012G103900.1.p locus=Potri.012G103900 ID=Potri.012G103900.1.v4.1 annot-version=v4.1 MGCVLGKYTARRRQSRGGSSDRGQSSDEQTVTVTEAVNAAVRVKREETATITSTSTTTQRQKATRDTGDFQVEDVQGGTERRRPRPEASLKCQQGWPSWL MAVAGDAIGDWTPRRANTFEKLDKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVLKIEGLVTSRMSCSLYLVFEYM EHDLAGLVARQGVKFTEPQVKCYMTQLLSGLEHCHNHRVLHRDIKGSNLLINNDGVLKIADFGLATFYDPDRKVPMTSRVVTLWYRPPELLLGATSYGVS VDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPNATLFKPQQPYKRCIAETFKDFPASSLPLIETLLSIDPDDRVTATAALNS EFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKANAVDGARRVRIRDRPGRAIPAPEANAENPANLDRWRAMTQANAKSKSEKFPPPHQDA AVGHPMDASHKGGPVSFGPSDSSFSSSIFDSKSSSIKSAGAIGGPSRRIKTNKEDLQMAPSRKFIRPFNPSSVGLSMNQLFKGKSEVFGNRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50860			Protein kinase superfamily pro...		Potri.012G103900 [exp]	0	1
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Potri.006G221700 [exp]	6.48	0.8115
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.003G157700 [exp]	17.08	0.8251	Pt-ARPC2.1
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.002G187200 [exp]	17.29	0.8471
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.001G462600 [exp]	19.05	0.7965
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	20.59	0.8315
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.003G141000 [exp]	21.79	0.8059
AT1G18900			Pentatricopeptide repeat (PPR)...		Potri.015G066400 [exp]	24.97	0.8169
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Potri.001G387300 [exp]	51.84	0.8125
AT5G67630			P-loop containing nucleoside t...		Potri.006G118900 [exp]	70.01	0.7919
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	71.97	0.8055	Pt-ATMRP14.3

Compare expression of checked genes

Potri.012G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.