Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50870 333 / 2e-118 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT5G41700 143 / 8e-44 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT1G78870 141 / 4e-43 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G16890 139 / 2e-42 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT3G08690 139 / 2e-42 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 138 / 5e-42 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT4G27960 137 / 1e-41 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 137 / 2e-41 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 136 / 3e-41 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT1G64230 136 / 3e-41 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103400 [exp] 387 / 9e-140 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.011G111400 [exp] 141 / 5e-43 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 140 / 7e-43 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.011G168200 [exp] 140 / 1e-42 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G471200 [exp] 139 / 2e-42 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G083800 [exp] 138 / 9e-42 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.016G138900 [exp] 137 / 1e-41 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 137 / 1e-41 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G131400 [exp] 137 / 1e-41 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008766 [exp] 363 / 2e-129 AT5G50870 326 / 1e-114 ubiquitin-conjugating enzyme 27 (.1.2) Lus10022248 [exp] 363 / 3e-129 AT5G50870 325 / 4e-114 ubiquitin-conjugating enzyme 27 (.1.2) Lus10017654 [exp] 143 / 1e-43 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 143 / 1e-43 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10028700 [exp] 142 / 2e-43 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 142 / 2e-43 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10038827 [exp] 137 / 2e-41 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 137 / 2e-41 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 137 / 2e-41 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 137 / 2e-41 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Potri.012G104100.1 pacid=42783174 polypeptide=Potri.012G104100.1.p locus=Potri.012G104100 ID=Potri.012G104100.1.v4.1 annot-version=v4.1 ATGATCGACTTTGCTCGTGTTCAAAAGGAGCTGCAAGAATGCAGCAGAGACATGGAGGCTTCTGGCATCAAAGTGGCACCTAAATCTGACAATCTTGCTC GATTAACCGGAACTATTCCTGGTCCTATCAGCTCTCCTTATGAAGGTGGCACTTTTCAAATTGATATCACTCTCCCAGATGGATACCCCTTTGAGCCTCC AAAAATGCAGTTTGCAACAAAAGTCTGGCACCCTAATATTAGCAGCCAAAGTGGGGCAATCTGCCTGGACATTTTGAAGGACCAGTGGAGCCCAGCACTC ACCCTAAAGACAGCACTTCTTTCTGTCCAAGCATTGCTCTCTGCTCCTGAACCTGACGATCCTCAAGATGCTGTTGTAGCACAACAGTATCTTAGAGACC ATCAGACCTTTGTTGGCACAGCTCGCTACTGGACAGAAACTTTTGCCAAGACCTCATCGCTTGGGGTTGAGGAAAAGGTTCAAAAACTTGTGGAGATGGG TTTCCCTGAAGCTCTGGCGAGAAGTGCACTAGAATCTGTTGGTGGTGATGAAAACTCGGCTCTTGAAAAGCTTTGTTCTGGTTAA
AA sequence Show only first row Show all	>Potri.012G104100.1 pacid=42783174 polypeptide=Potri.012G104100.1.p locus=Potri.012G104100 ID=Potri.012G104100.1.v4.1 annot-version=v4.1 MIDFARVQKELQECSRDMEASGIKVAPKSDNLARLTGTIPGPISSPYEGGTFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPAL TLKTALLSVQALLSAPEPDDPQDAVVAQQYLRDHQTFVGTARYWTETFAKTSSLGVEEKVQKLVEMGFPEALARSALESVGGDENSALEKLCSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.012G104100 [exp]	0	1
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.015G097400 [exp]	1.00	0.7593
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	8.48	0.7109
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.014G095400 [exp]	8.66	0.6993
AT3G60480			unknown protein		Potri.014G054300 [exp]	10.29	0.7135
AT5G40500			unknown protein		Potri.001G344700 [exp]	10.58	0.6620
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.010G137600 [exp]	11.13	0.6285
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.001G400900 [exp]	11.61	0.6626
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Potri.002G010300 [exp]	13.96	0.6655
AT5G01350			unknown protein		Potri.016G118800 [exp]	17.86	0.6742
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Potri.015G055500 [exp]	18.33	0.6331

Compare expression of checked genes

Potri.012G104100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.