Plant FIBer expression Database

Potri.012G104200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41110 302 / 3e-93 unknown protein
AT3G26890 274 / 2e-82 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G103500
[exp]
1103 / 0 AT3G26890 231 / 2e-66 unknown protein
Potri.001G324700
[exp]
443 / 6e-146 AT3G26890 415 / 1e-135 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031999
[exp]
313 / 5e-97 AT3G26890 400 / 3e-131 unknown protein
Lus10035170
[exp]
251 / 6e-74 AT3G26890 388 / 1e-126 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13889 Chromosome_seg Chromosome segregation during meiosis
PF13915 DUF4210 Domain of unknown function (DUF4210)
Representative CDS sequence
>Potri.012G104200.1 pacid=42783416 polypeptide=Potri.012G104200.1.p locus=Potri.012G104200 ID=Potri.012G104200.1.v4.1 annot-version=v4.1
ATGGGCCTGCCTCAGTTCTCCTCCAGCAGCATTGCTGAGGAAGTAGCCACATCTTTGAGCACAATTGTGCAAACTTCACCTCGAATTGTTGGTGTGAGCA
GTTGTGATTTGAGTGGGATGCATGGAGGAAACCTTGGACATCGAAGGCAGATAGAAATGCCCTGCACTTCTTTTACAGATTTGAAAAAGAAAACCATTGT
AGAGAATAAGGATGGCTTGTTAAGTCATAAAAGTGGACAGAATGTCCAGACACCTGTTCCTAGGATCATTGGTTTTGAATCAAAGGGATTGAATTCTCCT
GTTGGTGTATTTAATGGAAACCAAACTGCCTCTTCTGTAGTTACTATCAGGAGTAATGCATTTGAGTCCAGTGGGTCAGACAAGAAGCGGTTATTATCTC
CTCTTAGTGGGATGCTTCACCCTGAACAATTTAACGGTGCTTCCCTAGACATTGGAGATGGTATTTGTATGAATAATCTTTGGGGTAGTAAGGACAATTA
CAAGGTTTCTATGTCACAAGAACATAAGAAGGCTCATATTGGAAATTCCAGTTATTCAAACTGGTCTGCATCTTGTCTTCAAGAATGGAAGAATTCACCT
GATGATACTTGTAGGGAAAACTCCCTTTTCTTTTTTGATGGCCCTGTGCTTGAGACAGAGCTCAAGCCTCCTGATCAGTTTTTTTATCCACATGGACTTA
ATTATTTTGAAGAAACAATGAAGGTAAAGCATCAAATCAGCGCTATTGCAATTCCCTTAATAAAAGCAGCATCACCTCCCTTGTCACTGTCTCCTCTTGG
TCCAAAACTCTCTGAAGGAATAAAATCTCCAGGAACGGGCACCAATATCACCACAGAGCTTGATGATGACTATCTAGCCTTCACGGATATAGAACAGTCA
CTTAATGGAACAGTCTCTGGCATTTTATCTTCCCGGAAGGATGGGGGTTTTAAAATGCTAGATGAATCATTAGATAATTTTGATAATTTGCGCACAAAAT
TTGATGTTTTCACTCCTGAGATTACCAGTGGCATTGGACAGCCTTGGTGTGAGGATTCAAATCTTGGTTCCCTAAATGTCAGATCATTTAGAAGTTTTAC
TGGAGTGCCTGTTAGAAGGTCTTTAGTTGGTTCGTTTGAGGAGTCTTTGTTATCTGGGCGTTTATCATCTGGTAAAGTTAGTCAGAGAATTGATGGGTTC
CTTGCTGTTCTAAATATCACTGGAGGAAATTTCTCTCCGAAGACACAAAAACTTCCTTTTACAGTAACTAGCATGGATGGAAATAACTACTTACTCTACT
ATGCATCGATAGATCTAGCAGGGAATGTGCAAGCAAACAAGTATAGTGACCAAAATATGAGAAGGAGCCTTAGCATTGATGATTCACGATCCGAAAGAAG
CAGGCTACGGATACCGATGAAAGGGCGAATGCAGTTGGTTCTCAGCAATCCAGAAAAGACACCTATTCACACTTTCTTTTGTAGTTATGATTTAAGTGAC
ATGCCAGCTGGCACCAAGACATGTCTGCGCCAAAAGATCACACTATCCTCGTCAGCACCAGCTTCTTTGTCTGTGAATGGAAGAAACAGAGATTCTGACA
TGGAAACTGATGCAAAGCCATCTGCAGTCCCAAACACGAGTCATTCTTTACCTCATGGAAGAGATGCTACCAATTCAAATCGACTTGAAACTGTACATAA
TACAAAATTCCCTGACCATAGTAGATTCAGTAACAGTGAATGTAAAATAACTGGTGTGGAGGGCTGCAGCCCTCCAAATACATCTCATTTGTGCACAAGC
AAATCTGTAAATAGTCCTTCAAACGTCAATGAGAACACCACTAGAGCTGGTGTTCTACGTTATGCTCTTCAGCTCCAATTTATGTGTCCGCTTCCCAAGA
AAAGTTCGAGGTCACTCCAGAGGTGCAAATCTGATCCTTCCTCTGTACCAGCAGCAAACAAGATGGACATTGGCAGTGATCGACGCTTCTACTTATATAG
TAATATGAGGGTAGTCTTCCCCCAGCGCCATTCTGATTCAGATGAGGGCAAGCTAAAGGTGGAATACGATCATCCGTCAGATCCAAAGTACTTTGACATT
TAA
AA sequence
>Potri.012G104200.1 pacid=42783416 polypeptide=Potri.012G104200.1.p locus=Potri.012G104200 ID=Potri.012G104200.1.v4.1 annot-version=v4.1
MGLPQFSSSSIAEEVATSLSTIVQTSPRIVGVSSCDLSGMHGGNLGHRRQIEMPCTSFTDLKKKTIVENKDGLLSHKSGQNVQTPVPRIIGFESKGLNSP
VGVFNGNQTASSVVTIRSNAFESSGSDKKRLLSPLSGMLHPEQFNGASLDIGDGICMNNLWGSKDNYKVSMSQEHKKAHIGNSSYSNWSASCLQEWKNSP
DDTCRENSLFFFDGPVLETELKPPDQFFYPHGLNYFEETMKVKHQISAIAIPLIKAASPPLSLSPLGPKLSEGIKSPGTGTNITTELDDDYLAFTDIEQS
LNGTVSGILSSRKDGGFKMLDESLDNFDNLRTKFDVFTPEITSGIGQPWCEDSNLGSLNVRSFRSFTGVPVRRSLVGSFEESLLSGRLSSGKVSQRIDGF
LAVLNITGGNFSPKTQKLPFTVTSMDGNNYLLYYASIDLAGNVQANKYSDQNMRRSLSIDDSRSERSRLRIPMKGRMQLVLSNPEKTPIHTFFCSYDLSD
MPAGTKTCLRQKITLSSSAPASLSVNGRNRDSDMETDAKPSAVPNTSHSLPHGRDATNSNRLETVHNTKFPDHSRFSNSECKITGVEGCSPPNTSHLCTS
KSVNSPSNVNENTTRAGVLRYALQLQFMCPLPKKSSRSLQRCKSDPSSVPAANKMDIGSDRRFYLYSNMRVVFPQRHSDSDEGKLKVEYDHPSDPKYFDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41110 unknown protein Potri.012G104200
[exp]
0 1
AT1G04560 AWPM-19-like family protein (.... Potri.017G113000
[exp]
1.00 0.9488
AT4G34100 RING/U-box superfamily protein... Potri.001G304100
[exp]
5.83 0.9458
AT4G27220 NB-ARC domain-containing disea... Potri.011G124100
[exp]
6.32 0.8926
Potri.008G176201
[exp]
7.00 0.8883
AT4G22740 glycine-rich protein (.1.2) Potri.003G115400
[exp]
10.24 0.9420
AT5G42220 Ubiquitin-like superfamily pro... Potri.002G013500
[exp]
10.24 0.9170
AT1G09140 ATSRP30.1, ATSR... Serine/Arginine-Rich Protein S... Potri.005G024600
[exp]
12.96 0.9392
AT3G07090 PPPDE putative thiol peptidase... Potri.002G241700
[exp]
13.56 0.9419
AT1G03070 Bax inhibitor-1 family protein... Potri.002G049000
[exp]
14.49 0.9395
AT3G44110 ATJ3 DNAJ homologue 3 (.1.2) Potri.009G015700
[exp]
14.49 0.9274 Pt-PM37.1

Potri.012G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.