Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25040 98 / 6e-26 Uncharacterised protein family (UPF0497) (.1) AT4G15620 63 / 1e-12 Uncharacterised protein family (UPF0497) (.1) AT4G15630 61 / 2e-11 Uncharacterised protein family (UPF0497) (.1) AT1G14160 52 / 1e-08 Uncharacterised protein family (UPF0497) (.1) AT5G15290 51 / 3e-08 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT2G27370 50 / 8e-08 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT1G17200 50 / 1e-07 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT4G03540 46 / 2e-06 Uncharacterised protein family (UPF0497) (.1) AT1G03700 45 / 6e-06 Uncharacterised protein family (UPF0497) (.1) AT5G44550 44 / 1e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103600 [exp] 242 / 9e-83 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 104 / 3e-28 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 94 / 3e-24 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 60 / 3e-11 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 59 / 4e-11 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 57 / 2e-10 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 54 / 3e-09 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 54 / 4e-09 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 54 / 5e-09 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031998 [exp] 83 / 7e-20 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 81 / 3e-19 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 81 / 3e-19 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10043192 [exp] 79 / 1e-18 AT4G25040 61 / 3e-12 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 76 / 5e-17 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 70 / 2e-15 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 70 / 3e-15 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 56 / 3e-10 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 56 / 1e-09 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 54 / 3e-09 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.012G104300.1 pacid=42784240 polypeptide=Potri.012G104300.1.p locus=Potri.012G104300 ID=Potri.012G104300.1.v4.1 annot-version=v4.1 ATGGCAGACATTGAGACCAAGTCCTCCCAAAACCAGCCTTTGAAAACTCAAAATATTTTCATTGGAGCCCAAATCTTCCTCAGAATTGTGGTAATTGCTG CCTCATTTGCTTCAACATGGCTTATGCTCACCAACAAGCAAACCATCGACATTGGAGGATTTGTACTGGACGCAAATTATAGCTACTCTCCAGAATTCAA GTTTCTTTCTTACGCTAACATTGTTGTTGGTGCCTTCTCTTTCGTGTCTTTATTGTTTCTTGTTCTTGTTGGTCGTCGAAGCTCCAATCCTACCTACTAT TTCATCTTATTCCTTCATGATTTGGCTCTGATGTCTTTGGTCCTTGGTGGATGTGCTGCTGCGACTGTAATAGGTTCCTTGGGGAAGTATGGGAATAGCC ACACTGGTTGGATGCAAATCTGTGATCACTTTGGAAAATTCTGTAAGAGAGCAACAACTTCTGTGGCTTTCTCTTACTTCTCCTTGGTTTGCTTGTTGAT TCTTACAATCACCTCTGCAAGCAAATCCAGGCAAATTCAAGTTTAG
AA sequence Show only first row Show all	>Potri.012G104300.1 pacid=42784240 polypeptide=Potri.012G104300.1.p locus=Potri.012G104300 ID=Potri.012G104300.1.v4.1 annot-version=v4.1 MADIETKSSQNQPLKTQNIFIGAQIFLRIVVIAASFASTWLMLTNKQTIDIGGFVLDANYSYSPEFKFLSYANIVVGAFSFVSLLFLVLVGRRSSNPTYY FILFLHDLALMSLVLGGCAAATVIGSLGKYGNSHTGWMQICDHFGKFCKRATTSVAFSYFSLVCLLILTITSASKSRQIQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25040			Uncharacterised protein family...		Potri.012G104300 [exp]	0	1
AT5G42070			unknown protein		Potri.003G141700 [exp]	9.84	0.9273
					Potri.004G019733 [exp]	17.05	0.9112
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Potri.014G141500 [exp]	20.73	0.9020	Pt-ACD32.1
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	43.15	0.9023
AT3G10910			RING/U-box superfamily protein...		Potri.013G157000 [exp]	46.30	0.9022
AT1G74640			alpha/beta-Hydrolases superfam...		Potri.017G115100 [exp]	46.94	0.8907
AT4G00030			Plastid-lipid associated prote...		Potri.014G058400 [exp]	48.00	0.9020
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073700 [exp]	53.89	0.8801
AT1G30260		AGL79	unknown protein		Potri.011G081001 [exp]	57.87	0.8862
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	58.36	0.8956

Compare expression of checked genes

Potri.012G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.