Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50900 624 / 0 ARM repeat superfamily protein (.1) AT2G45720 263 / 7e-81 ARM repeat superfamily protein (.1.2) AT1G01830 253 / 8e-77 ARM repeat superfamily protein (.1.2.3) AT1G61350 165 / 2e-44 ARM repeat superfamily protein (.1) AT2G05810 150 / 4e-39 ARM repeat superfamily protein (.1.2) AT1G23030 56 / 6e-08 PUB11 ARM repeat superfamily protein (.1) AT2G23140 53 / 6e-07 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 49 / 6e-06 ARM repeat superfamily protein (.1) AT5G67340 47 / 3e-05 ARM repeat superfamily protein (.1) AT1G77460 47 / 4e-05 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103700 [exp] 906 / 0 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.014G076500 [exp] 322 / 3e-103 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 309 / 2e-98 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.004G033800 [exp] 197 / 5e-56 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 191 / 7e-54 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.002G224400 [exp] 184 / 4e-51 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.014G158700 [exp] 182 / 3e-50 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 57 / 4e-08 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 56 / 6e-08 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036559 [exp] 282 / 1e-87 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10041369 [exp] 281 / 2e-87 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10018423 [exp] 129 / 2e-31 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10016848 [exp] 124 / 5e-31 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2) Lus10029995 [exp] 122 / 1e-29 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10002598 [exp] 122 / 4e-29 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10035337 [exp] 118 / 8e-29 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10029996 [exp] 71 / 7e-14 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10035338 [exp] 71 / 1e-13 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10011516 [exp] 61 / 1e-09 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G104400.1 pacid=42783948 polypeptide=Potri.012G104400.1.p locus=Potri.012G104400 ID=Potri.012G104400.1.v4.1 annot-version=v4.1 ATGAAAATACCAGAAAACGACCCCATAACTCTCTCAAACGACCTTTTACACTCCCTTTTAAACCACCATATCCCGTTAATACAATCTTTCAAAGGCAAAT GGGGTTTAATAAAATCCAAACTAGCTGATCTTCAAACTCAACTCACTGATTTTTCCGAGTTCCAAACTTCACTCACTAACCCACTCTCTCTCGATCTCCT TCACTCTATTTCACAAACTCTAACCGATGCTATCCTCTCAGCTGAAAAGTGTCAAGATACAAACTTGACAGAAGGGAAGCTTAAAACTCAAAGTGATATT GATTCGATTTTAGCCAAGTTGAATCAAAATGTGAAAGATTGTGAGATTTTGATCAAAAGTGGGGTTCTTCAAGATGGAATAGTATCTGGGTCTGGCTCAA AAAGAGAGCTTGTTAGAGCTGAGTCAAGGAATTTGACAACTCGGTTGCAAATAGGGAGCCCCGAGTCTAAGAACTTGGCTATGGACTCAGTTTTGAGTTT GATTCAGGAGGATGATAAGAATGTAATGATTGCTGTTGCACAGGGTATTGTGCCTGTTCTTGTTAGATTACTTGATTGTAACAGTTGTCTTGATATTAAA GAGAAAACTGTAGCTGCAATTTCAATAATTTCAATGGTGGATAGCAGTAAACATGTTTTGATAGCAGAAGGGTTGTTGCTTTTGAATCAATTGATTAGGA TTCTCGAATCAGGAAGTGGATTCGCGAAAGAAAAAGCTTGTATTGCACTTCAAACTTTAAGCTTTTCGAGAGAGAATGCAAGGGCAATAGGATCTAGAGG TGGGATTTGTTCATTATTAGAGATTTGTCAAGCTGGAACACCTAGTTCACAGGGTCTTGCAAGTGGGGTTTTGAGGAACTTGGCTGTGTTTGAGGAGACT AGAGAGAATTTTATAGAAGAAAATGCTGTTTTTGTTCTCATTGGGCTTGCAGCTTCTGGGACTGCATTAGCTCAAGAAAATGCTATTGGTTGTTTATGCA ATTTGGTCAAGGATGATGAAAATTTGAAGCTTTTGATTGTCAAGGAAGGGGTTATTGAGTGTTTGAGGAATTACTGGGATTCATGTCCTCCGATGAGGAG TCCTGAAGTTGCTGTTGAGTTGTTAAGGGAGTTGGCTTCTAGCCAAGCTATTGCTGAAGGGCTTGTTTCTGATGGGTTTATTGTTAGGCTTGTGGCGGTG TTGAATCTTGGTGTCTCGGGTGTGAGAATTGCAGCTGCTAGAGCTGTGTCTGAGCTTAGTTGTAACACTAAAACAAGGAAAGAAATGGGTGAATTGGGGT GCATTGGTCCGTTGATTAAAATGTTGGATGGTAAGGCTGTGGAAGAGAAGGAAGCAGCAGCAAAAGCTTTGTCATTGCTTGTATTGTATGCTGGTAATAG GAGAATTTTCAGAAAGTCTGAGGGAGGGATAGTCAGCACAGTTCAGCTATTGGATACTTCGATACAGAATTTGGATAAGAAGTACCCTGTTTCTATATTG GCCTCACTTGTACATTCTAAGAAGTGTAGGAAGCAAATGATTGCTGCTGGTGCTAGCGTGCACTTGAAGAAACTCGTGGATATGAATGTTGAAGGATCTA AGAAGCTCTTGGATGGGCTTGGCCGGGGTAAGATTTGGGGTGTCTTTGCCAGGCCCTAG
AA sequence Show only first row Show all	>Potri.012G104400.1 pacid=42783948 polypeptide=Potri.012G104400.1.p locus=Potri.012G104400 ID=Potri.012G104400.1.v4.1 annot-version=v4.1 MKIPENDPITLSNDLLHSLLNHHIPLIQSFKGKWGLIKSKLADLQTQLTDFSEFQTSLTNPLSLDLLHSISQTLTDAILSAEKCQDTNLTEGKLKTQSDI DSILAKLNQNVKDCEILIKSGVLQDGIVSGSGSKRELVRAESRNLTTRLQIGSPESKNLAMDSVLSLIQEDDKNVMIAVAQGIVPVLVRLLDCNSCLDIK EKTVAAISIISMVDSSKHVLIAEGLLLLNQLIRILESGSGFAKEKACIALQTLSFSRENARAIGSRGGICSLLEICQAGTPSSQGLASGVLRNLAVFEET RENFIEENAVFVLIGLAASGTALAQENAIGCLCNLVKDDENLKLLIVKEGVIECLRNYWDSCPPMRSPEVAVELLRELASSQAIAEGLVSDGFIVRLVAV LNLGVSGVRIAAARAVSELSCNTKTRKEMGELGCIGPLIKMLDGKAVEEKEAAAKALSLLVLYAGNRRIFRKSEGGIVSTVQLLDTSIQNLDKKYPVSIL ASLVHSKKCRKQMIAAGASVHLKKLVDMNVEGSKKLLDGLGRGKIWGVFARP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50900			ARM repeat superfamily protein...		Potri.012G104400 [exp]	0	1
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.006G104100 [exp]	2.82	0.9144
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.004G057900 [exp]	13.71	0.8929
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283204 [exp]	16.88	0.8906
AT3G13840	GRAS		GRAS family transcription fact...		Potri.001G168800 [exp]	18.11	0.8887
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	25.09	0.8709
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283400 [exp]	25.69	0.8878	LEC.4
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.014G144600 [exp]	26.83	0.8355
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	29.69	0.8876
AT1G71980			Protease-associated (PA) RING/...		Potri.019G082500 [exp]	32.84	0.8341
					Potri.003G092900 [exp]	34.59	0.8786

Compare expression of checked genes

Potri.012G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.