Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LJLCB2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23670 855 / 0 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48780 844 / 0 ATSPT1 serine palmitoyltransferase 1 (.1) AT3G48790 534 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G36480 132 / 2e-33 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT5G04620 98 / 3e-22 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103800 [exp] 895 / 0 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.012G043800 [exp] 138 / 1e-35 AT4G36480 738 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.015G034600 [exp] 136 / 8e-35 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.001G126700 [exp] 83 / 1e-16 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016717 [exp] 900 / 0 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10036011 [exp] 895 / 0 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10013317 [exp] 142 / 4e-37 AT4G36480 774 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10005205 [exp] 133 / 1e-33 AT4G36480 772 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10009024 [exp] 86 / 1e-17 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01212 [poplar] [flax] Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence Show only first row Show all	>Potri.012G104500.1 pacid=42783034 polypeptide=Potri.012G104500.1.p locus=Potri.012G104500 ID=Potri.012G104500.1.v4.1 annot-version=v4.1 ATGATTAAGATCCCATATTTGACCGCATTGAGCACCTACTTCAGCTATGGCTTACTCTTCGCTTTTGGCCAATTCCGTGATTTCTTTCGTAAAATCTTCG ATTCGTGGCACTCTAGCAATCTTCAGGGTTATGCACCGATCTGTTTAGGCCTTGAAGACTTCTACATTCGTCGCTTATATCTTCGGATTCAGGATTGTTT TGGACGTCCGATTTCGAGTTCCCCGGGTGCGTGGTTCGATGTTGTCGAGCGGTACTCCAATGACAATAACAAGACGTTGAAACGGACTACCAAGGTAACT AGGTGTCTTAACTTGGGGTCCTATAATTATCTTGGGTTTGCTGCAGCTGATGAGTATTGTACGCCTCGTGTTATTGAGACATTGAAGAGGTTTTCGCCGA GTACTTGCAGTCCTCGTGTTGATGGAGGAACTACGATATTGCATAATGAACTGGAGGTGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCCATCGTGTT TGGCATGGGTTATGTCACAAACTCTGCCATCCTTCCTGTTCTGATTGGAAAGGGAGGATTGATAATTAGTGATTCATTGAACCACAACTCAATTGTGAAT GGTGCTCGAGGTTCAGGAGCAACAGTTAGGGTTTTCCAACACAATACGCCATCTCACTTGGAGGAAGTTTTGAGACAGCAAATTGCGGAGGGGCAACCAA GGACACATAGGCCTTGGAAGAAGATAATTGTCATTGTGGAGGGGATTTATAGTATGGAAGGCGAGCTCTGCAAACTTCCAGAGATTGTTGCAGTATGCAA GAAATACAAGGCATATGTTTACTTGGACGAGGCTCATAGCATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTTTGTGAACTCTTAGGAGTGGATACAGCT GATGTGGATATTATGATGGGAACTTTTACTAAATCGTTTGGATCTTGTGGGGGTTATATTGCTGGATCTAAGGAATTAATCCAATATCTTAAGTACAATT GTCCTGCTCATTTATACGCAACATCAATTTCCCCTCCAGCTGCACAACAAATTATATCTTCCATTAAGGTTATTCTTGGAGAGGATGGTTCTAGTAGAGG GGCTCAAAAACTTGCAAGAATACGCGAAAATAGCAACTTTTTCAGGTCAGAGCTGCAGAAAATGGGTTTTGAGGTTCTTGGTGATAATGATTCACCAGTG ATGCCCATAATGCTTTACAATCCAGCAAAAATCCCTGCATTTTCTCGGGAGTGTCTAAAGCAGAATGTTGCTGTTGTGACGGTTGCATTTCCAGCTACTC CTCTACTTTTGGCCAGGGCACGTATTTGCATATCTGCCTCTCATACCAAAGAAGATCTTCTCAAAGCATTGGAGGTTATCAGTCAAGTTGGTGACCTTGT TGGCATAAAGTACTTCCCTGCTGAGTCTGATAAGCAGCATCAGGAGCCAGGTGCACTCAAGTTGGAGTGA
AA sequence Show only first row Show all	>Potri.012G104500.1 pacid=42783034 polypeptide=Potri.012G104500.1.p locus=Potri.012G104500 ID=Potri.012G104500.1.v4.1 annot-version=v4.1 MIKIPYLTALSTYFSYGLLFAFGQFRDFFRKIFDSWHSSNLQGYAPICLGLEDFYIRRLYLRIQDCFGRPISSSPGAWFDVVERYSNDNNKTLKRTTKVT RCLNLGSYNYLGFAAADEYCTPRVIETLKRFSPSTCSPRVDGGTTILHNELEVCVANFVGKPAAIVFGMGYVTNSAILPVLIGKGGLIISDSLNHNSIVN GARGSGATVRVFQHNTPSHLEEVLRQQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDTA DVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYNCPAHLYATSISPPAAQQIISSIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPV MPIMLYNPAKIPAFSRECLKQNVAVVTVAFPATPLLLARARICISASHTKEDLLKALEVISQVGDLVGIKYFPAESDKQHQEPGALKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.012G104500 [exp]	0	1	LJLCB2.2
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	2.23	0.8132
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	6.32	0.7751
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	11.61	0.7248
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	12.12	0.7553
AT1G16170			unknown protein		Potri.003G186400 [exp]	18.02	0.7438
AT4G27660			unknown protein		Potri.012G006501 [exp]	18.54	0.7548
AT5G51830			pfkB-like carbohydrate kinase ...		Potri.015G134900 [exp]	21.44	0.6702
AT3G18430			Calcium-binding EF-hand family...		Potri.018G103600 [exp]	22.91	0.6917
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Potri.013G005500 [exp]	25.92	0.7277
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.008G144600 [exp]	28.72	0.7147

Compare expression of checked genes

Potri.012G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.