Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MMP.14
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24140 394 / 2e-136 Matrixin family protein (.1) AT1G70170 386 / 2e-133 MMP matrix metalloproteinase (.1) AT1G59970 366 / 6e-126 Matrixin family protein (.1) AT4G16640 271 / 3e-88 Matrixin family protein (.1) AT2G45040 244 / 2e-78 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103900 [exp] 558 / 0 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.001G157500 [exp] 281 / 2e-92 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.014G058200 [exp] 268 / 2e-87 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.003G077400 [exp] 269 / 2e-86 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.013G100400 [exp] 253 / 3e-82 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.013G033200 [exp] 230 / 4e-73 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.019G073800 [exp] 226 / 1e-71 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.019G073400 [exp] 224 / 4e-71 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.019G073700 [exp] 224 / 6e-71 AT1G59970 213 / 7e-67 Matrixin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030662 [exp] 350 / 3e-119 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10010719 [exp] 309 / 7e-104 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10004728 [exp] 286 / 3e-94 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10028955 [exp] 274 / 2e-89 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 266 / 2e-86 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10005605 [exp] 232 / 3e-74 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10039464 [exp] 227 / 3e-72 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10035221 [exp] 211 / 1e-65 AT1G24140 216 / 1e-67 Matrixin family protein (.1) Lus10028180 [exp] 209 / 4e-65 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10032175 [exp] 200 / 2e-61 AT1G59970 224 / 3e-71 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF00413 [poplar] [flax] Peptidase_M10 Matrixin CL0244 [poplar] [flax] PGBD PF01471 [poplar] [flax] PG_binding_1 Putative peptidoglycan binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G104600.1 pacid=42783279 polypeptide=Potri.012G104600.1.p locus=Potri.012G104600 ID=Potri.012G104600.1.v4.1 annot-version=v4.1 ATGACAAGATCACAGCAATATCCTCATCTTTTCATGATCACTATAATTCTTATTCTTCTCTCAATCAATTCAGTTCCTTCAATCTCTGCTCACTTTTTCC ATAGCAATGTTTCAATCCCAGAAGACTTGCTCAAAAACGCAACCTCTAATCCATGGAGTTTCTTCCATCAACTATCCGGCTGCCATGCTGGTGAAAAATA CGATGGCTTGGCCAAGCTCAAAAGCTACTTCCAGTACTTCGGTTACATCCCCAACTCCCTCTCCAATTTCACCGACGATTTCGATGACTCCCTCGAATCT GCTCTCCGAACTTACCAACAAAACTTCAACCTTAACATCACTGGCCAACTCGACGACCAGACAGTTAACCACATCGTACGGCCCAGGTGCGGCAACCCGG ATATAGTTAACGGCTCTTCCAGTATGAACTCTGGCAAGACACATAATACCTCGTCCAGTCACGTTCACACGGTTTCTCATTACTCCTTCTTTACTGGGAT GCCACGTTGGAGGAAGCAAGCCTTAACCTACGCGTTTTTGCCTGGGAATCAATTAACCGACGAGGTTAAGACCGTTTTCTCCCGCGCTTTCGACCGGTGG TCAACGGTGATTCCATTGACATTCACGCAGGCGGATTCTATCAACGCAGCTGATATTGGAATTGGGTTTTACAGTGGCGATCATGGAGATGGAGAGCCGT TCGATGGGGTTCTTGGGACTCTAGCACATTCTTTCTCTCCGCCAAGTGGACAGTTCCATCTTGACGGGGACGAGAATTGGGTCGTGACAGGTGATGTTAG GACATCGTCGTTGACGACAGCTGTCGATTTGGAGTCCGTGGCAGTACATGAGATTGGACATTTGCTAGGGTTAGGGCATTCCTCTGTGGAAGAGTCCATC ATGTACCCTACTATTTCTTCGAGGACTAAGAAAGTAGAATTGGCCGACGATGATATTCAAGGGATCCAAGTGTTGTATGGTAGCAACCCTAACTACAACG GTTCATCTACAACATCCGTTCAGGAGAAAGAGACTGGTAGTAGTGGGGCCCATTGTCTTCGTTCAAGGTGGGACCTTATTGGGTTAATCATGGCCTTTGG ATTTGTTCTGCTGCTTTTGTAG
AA sequence Show only first row Show all	>Potri.012G104600.1 pacid=42783279 polypeptide=Potri.012G104600.1.p locus=Potri.012G104600 ID=Potri.012G104600.1.v4.1 annot-version=v4.1 MTRSQQYPHLFMITIILILLSINSVPSISAHFFHSNVSIPEDLLKNATSNPWSFFHQLSGCHAGEKYDGLAKLKSYFQYFGYIPNSLSNFTDDFDDSLES ALRTYQQNFNLNITGQLDDQTVNHIVRPRCGNPDIVNGSSSMNSGKTHNTSSSHVHTVSHYSFFTGMPRWRKQALTYAFLPGNQLTDEVKTVFSRAFDRW STVIPLTFTQADSINAADIGIGFYSGDHGDGEPFDGVLGTLAHSFSPPSGQFHLDGDENWVVTGDVRTSSLTTAVDLESVAVHEIGHLLGLGHSSVEESI MYPTISSRTKKVELADDDIQGIQVLYGSNPNYNGSSTTSVQEKETGSSGAHCLRSRWDLIGLIMAFGFVLLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24140			Matrixin family protein (.1)		Potri.012G104600 [exp]	0	1	Pt-MMP.14
AT5G41761			unknown protein		Potri.006G017700 [exp]	1.00	0.9764
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134051 [exp]	4.69	0.9676
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033500 [exp]	6.00	0.9599
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134001 [exp]	6.24	0.9647
AT5G46080			Protein kinase superfamily pro...		Potri.011G058300 [exp]	7.48	0.9501
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134101 [exp]	8.77	0.9579
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133901 [exp]	10.95	0.9562
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	11.00	0.9551
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.018G080100 [exp]	11.48	0.9127
AT2G32210			unknown protein		Potri.001G439800 [exp]	11.61	0.9564

Compare expression of checked genes

Potri.012G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.