Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrPht3_3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 498 / 1e-177 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 469 / 2e-166 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 272 / 9e-90 PHT3;3 phosphate transporter 3;3 (.1) AT1G79900 64 / 2e-11 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 62 / 1e-10 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G48970 62 / 2e-10 Mitochondrial substrate carrier family protein (.1) AT1G25380 62 / 2e-10 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G51050 61 / 4e-10 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 61 / 4e-10 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT2G47490 56 / 2e-08 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G104400 [exp] 573 / 0 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.001G322300 [exp] 511 / 0 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.017G060800 [exp] 511 / 0 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 285 / 1e-94 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 267 / 9e-88 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.001G094100 [exp] 67 / 4e-12 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 65 / 2e-11 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G099800 [exp] 63 / 9e-11 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.007G019000 [exp] 62 / 9e-11 AT5G66380 463 / 8e-166 folate transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036014 [exp] 524 / 0 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 523 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10041519 [exp] 496 / 7e-177 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 494 / 6e-176 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10013839 [exp] 268 / 2e-87 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10026554 [exp] 267 / 3e-87 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10035975 [exp] 247 / 2e-77 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10032365 [exp] 66 / 2e-11 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 65 / 3e-11 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 65 / 3e-11 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.012G105100.1 pacid=42783190 polypeptide=Potri.012G105100.1.p locus=Potri.012G105100 ID=Potri.012G105100.1.v4.1 annot-version=v4.1 ATGGCCAAGAACAACAATTCTTGTCAATCTTTGATCCCAAGCTTTCTTTACTCTTCTTCCGCTGGCTCCAGTTATAATGGAGGAGTGCCGCACCTCCTGC AACAGTCTAAGCTTTCACCATCATCCAACAGTGGTGATCATGGAGTGCTGTCAAAGAACTTTGCCATACCAGCACCTTCGGAGAAGATAGAGATGTTCTC ACCAGCTTATTATTTGGCTTGTACTGCTGGTGGGATTTTTAGCTGTGGACTCACTCACATGACTGTCACTCCTCTTGATCTTGTCAAGTGCAATATGCAG ATTGACCCATCAAAGTACAAGAGCATTACTTCAGGATTTGGAGTATTGCTCAAGGAGCAGGGAGTTAGAGGTTTCTTTAGAGGATGGGTTCCTACCTTGC TTGGTTATAGTGCGCAGGGTGCTTGCAAATTTGGATTCTATGAGTTCTTTAAGAAGTACTACTCAGATATGGCTGGCCCTGAATATGCAGCCAAGTACAA GACCTTGATTTATCTTGCTGGTTCAGCATCTGCTGAATTAATTGCTGATGTTGCTCTCTGCCCTATGGAGGCAGTGAAAGTTCGTGTCCAAACTCAGCCT GGTTTTGCTAGGGGCTTGGCAGATGGCATGCCAAAGTTTCTCAGATCTGAAGGTTATTCTGGGTTATACAAAGGGCTTGTTCCTCTTTGGGGACGTCAGA TTCCATATACAATGATGAAATTTGCGTCCTTTGAGACTATTGTGGAGCAACTATACAAGAATGTCATCCCAACACCAAAAGACCAGTGCAGCAAAAATTT GCAGCTTGGAGTCAGCTTTGCTGGTGGATACCTTGCTGGTATACTCTGTGCTATTGTCTCACACCCTGCTGACAACCTGGTGTCTTTCCTCAACAGTGCC AGGGGGGCGACTGCTGGTGATGCCATCAGGCAGCTAGGTTTATGGGGTCTCTTTACCCGCGGCCTTCCTCTCCGAATTGTCATGATAGGAACACTTACAG GAGCACAATGGGGTATCTATGATGCATTTAAAGTGTTTGTTGGCCTACCAACTACTGGTGGTGCTGCTCCTGCTCCAGCTGTTGCAAAGCCTTAA
AA sequence Show only first row Show all	>Potri.012G105100.1 pacid=42783190 polypeptide=Potri.012G105100.1.p locus=Potri.012G105100 ID=Potri.012G105100.1.v4.1 annot-version=v4.1 MAKNNNSCQSLIPSFLYSSSAGSSYNGGVPHLLQQSKLSPSSNSGDHGVLSKNFAIPAPSEKIEMFSPAYYLACTAGGIFSCGLTHMTVTPLDLVKCNMQ IDPSKYKSITSGFGVLLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMAGPEYAAKYKTLIYLAGSASAELIADVALCPMEAVKVRVQTQP GFARGLADGMPKFLRSEGYSGLYKGLVPLWGRQIPYTMMKFASFETIVEQLYKNVIPTPKDQCSKNLQLGVSFAGGYLAGILCAIVSHPADNLVSFLNSA RGATAGDAIRQLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPAPAVAKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.012G105100 [exp]	0	1	PtrPht3_3
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G076800 [exp]	4.12	0.8113
AT1G29270			unknown protein		Potri.011G070000 [exp]	10.19	0.7656
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Potri.006G015400 [exp]	11.83	0.7273	Pt-RAB11.16
AT4G12540			unknown protein		Potri.013G040800 [exp]	28.98	0.7658
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	29.34	0.7559
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.018G033000 [exp]	46.31	0.6970
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	48.98	0.7101
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	57.44	0.6755
AT1G57680			unknown protein		Potri.012G023500 [exp]	82.95	0.6615
AT5G06550			unknown protein		Potri.016G065400 [exp]	84.33	0.6227

Compare expression of checked genes

Potri.012G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.