Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 751 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 728 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 436 / 4e-150 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 417 / 7e-143 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 415 / 7e-142 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 394 / 3e-134 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 348 / 8e-116 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G02110 347 / 3e-115 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24000 339 / 2e-112 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 338 / 2e-112 SCPL23 serine carboxypeptidase-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G104700 [exp] 875 / 0 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 749 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 738 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 622 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 570 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.016G034400 [exp] 569 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 566 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 559 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 419 / 1e-143 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016722 [exp] 763 / 0 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 754 / 0 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 605 / 0 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 531 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10010331 [exp] 531 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 528 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 523 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 519 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 493 / 2e-172 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 488 / 2e-170 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.012G105500.1 pacid=42783087 polypeptide=Potri.012G105500.1.p locus=Potri.012G105500 ID=Potri.012G105500.1.v4.1 annot-version=v4.1 ATGCACTCTCAAACTTGGAAAGCCATGACAATGGCTGCACTAGTGGTTCAGCTGTGCACTTCCATGGGTGTAGATTCTTCTTCACCTCATCCTGATAAGA TTGCTGGGCTTCCTGGACAACCCCATGTGGGCTTTCAACAATTTTCAGGTTATGTTACCGTGGATGGTAACAAGCATAGAGCTCTTTTTTATTACTTCGT TGAAGCAGAAATAGATCCGGCATCAAAGCCTTTGGTTCTCTGGTTGAATGGAGGGCCTGGATGTTCTTCTCTGGGAGTAGGGGCATTCTCTGAAAATGGA CCTTTCAGACCAAATGGGAGAGTTCTGATCAGAAATGAGCATAGCTGGAATAGAGAAGCAAATATGTTGTATCTGGAGACACCAGTGGGTGTGGGGTTCT CTTATTCTACAGATAACTCCTCCTATGTGGCAGTAGATGATGAGGCAACAGCCAGGGACAATCTTGTGTTCTTGCAAGGCTGGTTCCACAAGTTCCCTCA GTACAGGAACAAAGATTTGTTTATAACAGGGGAAAGTTATGCAGGCCACTATATTCCTCAACTTGCAAAGCTTATGGTTGAAATTAACAAGAAGGAGAGG CTAGTCAATTTGAAAGGAATTGCGCTCGGTAATCCTGTTCTAGAATTTGCTACAGACTTAAATTCAAGGGCTGAGTACTTCTGGTCTCACGGATTGATTT CAGATTCAACATACAAAATGTTCACATCTGCTTGTAACTATTCAAGATATGTGAGTGAATATTATAGAGACTCGGTTTCATCTGTTTGCTCACTAGTTAT GAAACAAGTTAGCACAGAAACCAGTAGGTTTGTGGACAAATATGATGTTACCCTTGATGTTTGTATTCCATCAGTCCTCTCACAATCAAAGGTTATAAGT CCTAAGCAAGTATCTGAGAGGATTGATGTTTGTATAGAAGATGAAACTGTGAATTATCTGAACCGGGAAGATGTGCGGAAGGCTCTCCATGCCCGGCTTA TTGGAGTTCGCAGATGGGAAGTTTGCAGCAACATTCTGGATTATGAGGTGCTTAACATAGAGATACCAACAATCAATATTGTTGGATCACTCATCAAGGC TGGAATTCCAGTGTTGATTTACAGTGGAGATCAAGATTCTGTGATTCCGTTGACCGGAAGCCGCACCCTTGTCCATAGACTGGCAAAAGAGCTGGGACTC AATACAACCGTCCCTTACAGAGCTTGGTTTGCAGGAAAACAGGTTGGTGGTTGGACTCAGGTTTATGGTAACATCCTCTCATTTGCTACCATCAGAGGCG CATCTCATGAAGCTCCATTTTCACAGCCTGAGAGATCACTCATGTTATTTAAGTCATTCCTACAGGGCAAACACTTACCTGAAGTTTTCTGA
AA sequence Show only first row Show all	>Potri.012G105500.1 pacid=42783087 polypeptide=Potri.012G105500.1.p locus=Potri.012G105500 ID=Potri.012G105500.1.v4.1 annot-version=v4.1 MHSQTWKAMTMAALVVQLCTSMGVDSSSPHPDKIAGLPGQPHVGFQQFSGYVTVDGNKHRALFYYFVEAEIDPASKPLVLWLNGGPGCSSLGVGAFSENG PFRPNGRVLIRNEHSWNREANMLYLETPVGVGFSYSTDNSSYVAVDDEATARDNLVFLQGWFHKFPQYRNKDLFITGESYAGHYIPQLAKLMVEINKKER LVNLKGIALGNPVLEFATDLNSRAEYFWSHGLISDSTYKMFTSACNYSRYVSEYYRDSVSSVCSLVMKQVSTETSRFVDKYDVTLDVCIPSVLSQSKVIS PKQVSERIDVCIEDETVNYLNREDVRKALHARLIGVRRWEVCSNILDYEVLNIEIPTINIVGSLIKAGIPVLIYSGDQDSVIPLTGSRTLVHRLAKELGL NTTVPYRAWFAGKQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLMLFKSFLQGKHLPEVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	0	1
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	2.44	0.9276
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	2.64	0.9354	SKU5.2
AT3G56750			unknown protein		Potri.006G040400 [exp]	3.46	0.9202
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	4.47	0.9165
AT4G10390			Protein kinase superfamily pro...		Potri.011G147100 [exp]	5.19	0.9006
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	5.29	0.9180
AT4G38650			Glycosyl hydrolase family 10 p...		Potri.004G173300 [exp]	8.66	0.8799
AT1G69080			Adenine nucleotide alpha hydro...		Potri.008G109000 [exp]	8.94	0.8918
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	9.16	0.9129
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	12.12	0.9123

Compare expression of checked genes

Potri.012G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.