Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 251 / 1e-83 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 228 / 1e-74 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 220 / 1e-71 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 216 / 3e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 216 / 6e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 192 / 5e-60 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 187 / 2e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 177 / 2e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G42960 172 / 1e-52 ASD, ATA1 TAPETUM1, TAPETUM 1 (.1) AT4G03140 174 / 2e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105600 [exp] 501 / 0 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G104800 [exp] 461 / 2e-166 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G065700 [exp] 403 / 2e-143 AT2G47140 248 / 1e-82 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G065600 [exp] 300 / 1e-102 AT2G47140 258 / 1e-86 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G115300 [exp] 236 / 8e-78 AT2G47140 346 / 3e-121 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 215 / 2e-69 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 208 / 1e-66 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 208 / 1e-66 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 197 / 6e-62 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042181 [exp] 271 / 3e-91 AT2G47130 255 / 3e-85 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 237 / 6e-78 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 233 / 2e-76 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 214 / 9e-69 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 211 / 1e-67 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 204 / 6e-65 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 194 / 2e-60 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 191 / 9e-60 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 186 / 3e-58 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 184 / 3e-57 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.012G105700.1 pacid=42783075 polypeptide=Potri.012G105700.1.p locus=Potri.012G105700 ID=Potri.012G105700.1.v4.1 annot-version=v4.1 ATGGCATCTACAAAACCTTGCAAGAACAAGGTTCAAGACAAGGTTGCTATCGTCACGGGAGGTGCCAGTGGCATAGGCGAGGCCACCGTGCTTGCCTTTG CTGAAAATGGCGCACGAGCAGTCGTGATCGCAGATATTCAAGATGAAAAGGGCCAAAAGCTTGCAGAATCCATCGGAACTAACAGATCCACTTACATCCA CTGTGATGTAGGTGATGAAAACCAAGTCAAATCCCTTGTGGAGTCCACTGTTCAACTTTATGGTCACCTTGACGTAATATTCTGCAATGCCGGCATTGCA AGCTTTGGTAAGCAAAATGTTCTTGACTTCGACCTGGACTCGTGCGACAAACTCTTTGCAGTAAACGTGCGTGGCACAGCAGCATGCCTAAAGCACGCGG CGCGTGCCATGGTGGACGGAGGTGTAAAGGGCAGCGTCATTTGCACATCAAGCGCCGCTGCGAATCTCGCAGGGGTCAGGTTCACAGATTATATCATGTC CAAGAGCGGGGTTTTGGCACTGATGAAATGTGCAAGTTATCAGTTGGGTGAGCATGGTATAAGAGTCAACTGTGTGTCGCCAGGACCCGTGGCAACACCT CTAGCATGCAAGACATTCGAAAAGGGAGTAGAGGAGGTGGAGAAGGCTTTTCAGTCGTCTTATTGCTTGAAAGGTGTGTTGAAAACGAAGCACGTAGCTG ACGCAGTGCTGTTTCTCGCTTCTGACGATTCTGAGTTTGTGACTGGCCAGAATTTGATCGTCGATGGTGGGTTTAATTTTCAAGGTATTCCCAAATAA
AA sequence Show only first row Show all	>Potri.012G105700.1 pacid=42783075 polypeptide=Potri.012G105700.1.p locus=Potri.012G105700 ID=Potri.012G105700.1.v4.1 annot-version=v4.1 MASTKPCKNKVQDKVAIVTGGASGIGEATVLAFAENGARAVVIADIQDEKGQKLAESIGTNRSTYIHCDVGDENQVKSLVESTVQLYGHLDVIFCNAGIA SFGKQNVLDFDLDSCDKLFAVNVRGTAACLKHAARAMVDGGVKGSVICTSSAAANLAGVRFTDYIMSKSGVLALMKCASYQLGEHGIRVNCVSPGPVATP LACKTFEKGVEEVEKAFQSSYCLKGVLKTKHVADAVLFLASDDSEFVTGQNLIVDGGFNFQGIPK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.012G105700 [exp]	0	1
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.005G185800 [exp]	1.41	0.9497
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.008G193400 [exp]	2.00	0.9501
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.013G131000 [exp]	4.89	0.9217
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G025200 [exp]	5.91	0.9402
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136800 [exp]	6.32	0.9401
					Potri.001G388600 [exp]	8.83	0.9326	PPO5
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Potri.014G020700 [exp]	9.48	0.9412
AT2G48140		EDA4	embryo sac development arrest ...		Potri.005G212000 [exp]	9.48	0.9457
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.008G076400 [exp]	9.59	0.9430
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	12.36	0.9379

Compare expression of checked genes

Potri.012G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.