Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PHS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23720 1006 / 0 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G23610 117 / 9e-30 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 86 / 4e-19 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G55270 89 / 8e-18 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 56 / 3e-08 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105000 [exp] 1459 / 0 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.010G033000 [exp] 99 / 1e-23 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.008G049900 [exp] 90 / 3e-18 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G210900 [exp] 90 / 4e-18 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.016G035700 [exp] 61 / 2e-09 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 59 / 7e-09 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.014G160500 [exp] 51 / 2e-06 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.014G045500 [exp] 45 / 0.0001 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032545 [exp] 1073 / 0 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 993 / 0 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10021940 [exp] 106 / 4e-26 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 96 / 4e-22 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 89 / 2e-20 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 87 / 3e-17 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 87 / 3e-17 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10003291 [exp] 85 / 2e-16 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10030324 [exp] 84 / 3e-16 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10022402 [exp] 58 / 2e-08 AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain CL0016 [poplar] [flax] PKinase PF09192 [poplar] [flax] Act-Frag_cataly Actin-fragmin kinase, catalytic
Representative CDS sequence Show only first row Show all	>Potri.012G105800.1 pacid=42783603 polypeptide=Potri.012G105800.1.p locus=Potri.012G105800 ID=Potri.012G105800.1.v4.1 annot-version=v4.1 ATGATGTCGAAAGATGAAAAGGAAGACACTTTATCAATCATCAACACCACAGTCCAAGTCCAGGAGGAAGAGAGGGAACTGGACCTGGGATCTGAAGAGC TTGATCCTCCTTTACCTCCTACTGTTACTTCCCGGGTATTGTATATGTTGGGAGATATAACGGCGGGCCCAGCATATCGGTTTGCACAATGGCTGGAGTT GGTTCGTAAGAGAAGTGACAAGTATCGTGCCTCGGGGTTCCCACGCCGGCCTTACAGGCTCGAAACTATGCCCTCCAGTGTGGGAGAATCACTTGTTGAT TCAAAAAGTCCACCTCCTGAGCAAGCTCCAGAGGTCAGTTTGTGGGAAAGGCTTGGTAAAGCTGCGGCACTGGACATTGAGTCGAGCTCTTTTTCTTGGG ACATGCTGTCTTCCCTCCACCACACTGAGCATAGTAGTAGCACCGAAAATTCTGAGGATGAAATGAGTAAAGCCCTAGAAGTAACTGTAAATTCTGGGGG AGTAGTATTCTTTGCCTTGTTCAACCAGCAAGGAAATGCTGATGCTTTTCACAAGGAATCAGCAGCTGTCATAAAGTTTTCATCTTCAAGGATGGCCACA CAATCAGAACGTCTTGGCTATGAATTTGCAAAGTGGTTAGGAGTCCAAACTCCACAGGCTAGAGTCGTTCAAAATTGCAGCCCAGAGTGGCTCCAGATCA AGGAAGCTGCAGAGAAAGCAAGAGTTACAGCAGCTTCAGAAGGAGATGAAGTAGGTGAAGTGACATGTTCTGAGCTTCTGGAAGCTCTTGAACTCAGCCG ATGTCTTCTTTTGATGAGTTATGTTCATGGATCTCCTTTATTGGAGAGCTCAAATGCATTTGAGCCACGTGAGACTGGAGAAAGAATTGCAGCAGCACTT GGTAGGGTCTTCCTATTGGACCTTGTCATCAGAAATGAAGATAGACTCCCTTGCCGTGAGCTCAGATGGCGTGGAAATCCAGCAAATCTATTGTTGGCTG AGAAAATGACCTCATCAAATGTAAATGCCTTGGAGGTTGCTTCTGATTCTGCAATTAACCGACACCGACCAAAGGTGATTAAAGCTCTACAGAAAGAAAG AAGGGCAACTTCACTGAATAGCAAGTTTAACACTCATAATCGAGTACCAGGACTTGTATCACAGGGCTCTGATGTTTCTGATATTACAGAATCTCCAAAA TCCAACAAAATGCCAAGAGTCCGAAAATCAGGAGAATCATCGTTTTCTGACCTCATTTCTCACGCTGTGGCTATTGATTCTGGTGTTCCTCGTCGGCCTC CTGCTGAAAAACGCACAAACGACCAGGCAAATTATCCTAAATTGATTGAGCTGCTTCTCAACAGTTCTGATTACACCTCTAATTTGTTATATGAAGTAAC AGGAGGGAAATTAGGGGCTCCTCCATTGGTAGGCACTGACTTTACTGATACACAAGTAACAGAAATGGCGTCAGTTGTTCAGGAATTTCGAGGTGGGTTT CGTGCTGCGCTCAGGGATCTGCAAGGTTTCCACGTGTTCCTTCTCACTCTTCACCAAAAACTCGATGGCTTGTTACGAGTTTTATTGAACATCGCAAATA AAACATCAGGGGACACTGACAGAGAAGATTTGGTGATCCCCGAGTCACCTTCACATGGGGTTCTTCATTATCCTTCTCCACCAAGTAAGGAACGCTTTCT TAATGATAACCATTCAGATTTTAGTGATTCAGATTCACAGAGAATGGCTCAAACTCCAAGGTCATCTTTAGGAAGTAAAGAGAGCTCAGATTCTAGTTCT CCCATGTCAAGAGAAAGCTGGCATGGAAAGTTGTCCAAGGGGAGTGGAGAGCCCCTTCGTAGCCTGTGTCTAACAACAAAGCTCCGTGAAATTCTTAAAT TTGCCAAGGTCGATACTGAAACAAATGAAGAATTAGAACACTGGAATGAAATGCTGAGAAATGATGCTATCAAACTCTGTCAGGAGAACAATTTCAATAC AGGATATTTTGAGGGCAGTGATAGTAACTGTGTTGTGGATGCATATGAGTTGAAGGTAAGATTAGAGCACATTCTTGAGAGGATATCATTGATCTCTGAA GCTGCAAACACAGAGAAACCATCATTAATCACAAATAGTCTGTTTATTGGTGGCACCCTGGCTGCAAGATCAGTTTACACTTTGCAACATCTAGGAATCA CACATATTTTGTGTTTGTGTGCCAATGAAATTGGACAGTCAGAGTTACAACACCCAGATCTGTTTCAGTACAAGAATTTTTCGATTAGTGACCATGAGGA TTCAAATATCAGCAGTATCTTTGGAGAAGCTTCTGATTTTATTGATCATGTTGAATCAATAGGTGGAAGGGTTCTAGTTCATTGCTTTGAAGGGAGAAGT AGGAGTGCTACATTAGTTCTTGCATATTTAATGCTCAGGAAGAAATTCACTCTACTAGAAGCATGGAATGCTCTAAGACGAGCTCACCGCCGAGCTCAGC CCAATGATGGTTTTGCAAAAGCTTTATTGGATCTGGATCGCCAACTGCACGGGAAGGTTTCCATGGAATGGCAGAGGCGGAAGCCAGAGATTAAAGTTTG TCCCGTCTGTGGGGATAATGCTGGTCTGAGCAGCAGTTCACTCAAGCTTCACTTGCAGAAATCACACAAGAAGCTATCATCAGGCAGCGTGGATAGTGCA ATGACTATGGAGATACAAAAGGCTCTGGATGCACTAAAAATGACCCGAGGTGGCAGCGTCAGCCCTACATTGAGGCAGTCTTCGCCATCTCTGGATGGCT AG
AA sequence Show only first row Show all	>Potri.012G105800.1 pacid=42783603 polypeptide=Potri.012G105800.1.p locus=Potri.012G105800 ID=Potri.012G105800.1.v4.1 annot-version=v4.1 MMSKDEKEDTLSIINTTVQVQEEERELDLGSEELDPPLPPTVTSRVLYMLGDITAGPAYRFAQWLELVRKRSDKYRASGFPRRPYRLETMPSSVGESLVD SKSPPPEQAPEVSLWERLGKAAALDIESSSFSWDMLSSLHHTEHSSSTENSEDEMSKALEVTVNSGGVVFFALFNQQGNADAFHKESAAVIKFSSSRMAT QSERLGYEFAKWLGVQTPQARVVQNCSPEWLQIKEAAEKARVTAASEGDEVGEVTCSELLEALELSRCLLLMSYVHGSPLLESSNAFEPRETGERIAAAL GRVFLLDLVIRNEDRLPCRELRWRGNPANLLLAEKMTSSNVNALEVASDSAINRHRPKVIKALQKERRATSLNSKFNTHNRVPGLVSQGSDVSDITESPK SNKMPRVRKSGESSFSDLISHAVAIDSGVPRRPPAEKRTNDQANYPKLIELLLNSSDYTSNLLYEVTGGKLGAPPLVGTDFTDTQVTEMASVVQEFRGGF RAALRDLQGFHVFLLTLHQKLDGLLRVLLNIANKTSGDTDREDLVIPESPSHGVLHYPSPPSKERFLNDNHSDFSDSDSQRMAQTPRSSLGSKESSDSSS PMSRESWHGKLSKGSGEPLRSLCLTTKLREILKFAKVDTETNEELEHWNEMLRNDAIKLCQENNFNTGYFEGSDSNCVVDAYELKVRLEHILERISLISE AANTEKPSLITNSLFIGGTLAARSVYTLQHLGITHILCLCANEIGQSELQHPDLFQYKNFSISDHEDSNISSIFGEASDFIDHVESIGGRVLVHCFEGRS RSATLVLAYLMLRKKFTLLEAWNALRRAHRRAQPNDGFAKALLDLDRQLHGKVSMEWQRRKPEIKVCPVCGDNAGLSSSSLKLHLQKSHKKLSSGSVDSA MTMEIQKALDALKMTRGGSVSPTLRQSSPSLDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.012G105800 [exp]	0	1	Pt-PHS1.1
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.014G110500 [exp]	4.12	0.7427	Pt-POL.1
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Potri.009G161900 [exp]	5.09	0.6840	E2F1.1
AT1G71740			unknown protein		Potri.005G198200 [exp]	20.68	0.7186
AT3G47400			Plant invertase/pectin methyle...		Potri.012G126900 [exp]	24.49	0.7045
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.001G380900 [exp]	28.61	0.6475
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	33.00	0.6876
AT4G31080			Protein of unknown function (D...		Potri.006G281400 [exp]	55.69	0.6364
AT5G14360			Ubiquitin-like superfamily pro...		Potri.001G339100 [exp]	59.68	0.6713
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	64.65	0.6109
AT5G09760			Plant invertase/pectin methyle...		Potri.005G061500 [exp]	67.76	0.6288

Compare expression of checked genes

Potri.012G105800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.