Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ICE1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26744 339 / 7e-111 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G12860 294 / 6e-94 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65640 128 / 1e-32 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 112 / 3e-27 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 94 / 6e-20 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 80 / 1e-15 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G29930 73 / 7e-15 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G32640 73 / 3e-13 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G28160 71 / 4e-13 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT4G00870 71 / 6e-13 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105200 [exp] 867 / 0 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G108400 [exp] 135 / 2e-35 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.009G136300 [exp] 92 / 2e-19 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 86 / 1e-17 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 81 / 8e-16 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 79 / 1e-15 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 79 / 2e-15 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 74 / 3e-15 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141800 [exp] 75 / 7e-15 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043199 [exp] 437 / 3e-148 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 419 / 4e-141 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10039631 [exp] 119 / 6e-30 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 112 / 1e-27 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2) Lus10007618 [exp] 77 / 5e-16 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018395 [exp] 77 / 2e-15 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 74 / 4e-15 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005999 [exp] 77 / 9e-15 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 74 / 9e-14 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 74 / 1e-13 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G106000.1 pacid=42783271 polypeptide=Potri.012G106000.1.p locus=Potri.012G106000 ID=Potri.012G106000.1.v4.1 annot-version=v4.1 ATGCTTTATAGACTCAATAGCAACAATATTTGGCTTGAAGATCATAAAGAAGAGCAAGATTCAACAACAAACCATCATCACCACAACAACATTACCAATA CTGCAGCTGGTTGTGGCGGGGTTATGTTGGAGGGAAAAGAAGAAATGGGTTCTCTTTCTACTTTCAAATCTATGTTTGAAGTGGAAGATGAGTGGTACGT GACTAACAACAACAGTACTATTCATCAAAACCATCAAGATAGTATCAAAGACCTCACTTTTTCACCAAGTCTTGTCGACCCAGATAATCTTTTGCTTCAC CAAGTGGATTCTTCCTCTTCTTGTTCACCTTCTTCTTCAGTTTTCAACAATTTGGATCCTTCTCAGGTACATTACTTTATGCATCCAAAGCCCACTTTGT CTTCACTCCTCAATGTGGTTTCTAACAACCCTTTAGAGCATGGGTTTGATTTGAGTGAAATTGGTTTCCTTGAGAATCAAGGAACAAATTCAACTACAAC AGCAAATGTTTCATCTCTGTTAAACAGGGGAAGTGGTGTTTTGGGGAATTTGGGGAATTTCACTGATTTGAGCTCAAACAGTCAGATTAGTATTCCTAAT TTATGTTCTGATCCACAATTTTCAAGTTCCCGCATGCTTCAGTTGCCTGAAAATGGTCCTGGGTTTAATGGTTTTAGAGGGCTTGATGAGATTTCGGGGA ATCAGTTGTTTTTTAACAGGTCTAAATTGTTAAGGCCTCTTGAAACTTACCCTTCAATGGGCGCACAGCCTACCTTGTTTCAAAAGAGAGCAGCTTTGAG GAAGAACTTGGGTGAAGTTGAGAGAGATAAAGGGAAGAGAGAAATGACTCAAATTAGTGAAGAGAAAGACAAGAAGAGAAAATTTAGTAGTGGAGATGAT TTTCTTGAGGATGTTAGCTTTGATGGGTCGGGTTTGAATTATGATTCTGATGAATTTACTGAGAATACTAATTTGGAGGAGACTGGCAAGAATGGTGGAA ACAGTTCAAAGGCGAATAGTGGTGTTACTGGTGGTGGTGTGGATCAAAAGGGGAAGAAAAGGGGGCTTCCAGCTAAGAATTTGATGGCAGAGAGGAGGCG CCGGAAGAAACTCAATGATAGGCTGTACATGCTGAGGTCTGTTGTTCCAAAGATCAGCAAAATGGATAGGGCATCAATCCTTGGGGATGCAATTGATTAC TTGAAAGAACTTCTGCAAAGGATTAATGACCTCCATAATGAATTGGAGTCAACTCCCCCCAGCTCTTCATTGACGCCAACCACTAGTTTTCATCCTTTGA CACCGACTCCATCAGCGCTGCCCAGCCGTATCATGGACAAACTTTGCCCCGGCTCATTGCCAAGCCCAAATGGCCAACCTGCAAGGGTCGAGGTTAGAGT GAGAGAAGGGCGAGCTGTAAACATCCACATGTTTTGTGGCCGCAAACCAGGTCTTTTGCTCTCCACTATGAGAGCTTTGGATAACCTTGGGCTAGACATC CAGCAAGCTGTCATTAGCTGTTTCAATGGTTTTGCCATGGATATCTTCCGAGCTGAGCAATGCAAAGAAGGGCAGGACATGCATCCAGATCAAATTAAAG CAGTCCTACTGGATTCAGCTGGCTTCCATGGCGCGATGTAG
AA sequence Show only first row Show all	>Potri.012G106000.1 pacid=42783271 polypeptide=Potri.012G106000.1.p locus=Potri.012G106000 ID=Potri.012G106000.1.v4.1 annot-version=v4.1 MLYRLNSNNIWLEDHKEEQDSTTNHHHHNNITNTAAGCGGVMLEGKEEMGSLSTFKSMFEVEDEWYVTNNNSTIHQNHQDSIKDLTFSPSLVDPDNLLLH QVDSSSSCSPSSSVFNNLDPSQVHYFMHPKPTLSSLLNVVSNNPLEHGFDLSEIGFLENQGTNSTTTANVSSLLNRGSGVLGNLGNFTDLSSNSQISIPN LCSDPQFSSSRMLQLPENGPGFNGFRGLDEISGNQLFFNRSKLLRPLETYPSMGAQPTLFQKRAALRKNLGEVERDKGKREMTQISEEKDKKRKFSSGDD FLEDVSFDGSGLNYDSDEFTENTNLEETGKNGGNSSKANSGVTGGGVDQKGKKRGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDY LKELLQRINDLHNELESTPPSSSLTPTTSFHPLTPTPSALPSRIMDKLCPGSLPSPNGQPARVEVRVREGRAVNIHMFCGRKPGLLLSTMRALDNLGLDI QQAVISCFNGFAMDIFRAEQCKEGQDMHPDQIKAVLLDSAGFHGAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.012G106000 [exp]	0	1	ICE1.2
AT5G42765			unknown protein		Potri.014G196800 [exp]	7.54	0.9243
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	10.95	0.8795	LIP2.2
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.005G095800 [exp]	11.61	0.8717
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Potri.010G005000 [exp]	15.00	0.9198
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	24.81	0.9117
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G068300 [exp]	28.10	0.9105
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	31.17	0.9037
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	31.22	0.8971
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	32.15	0.8881
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G151200 [exp]	34.08	0.8951

Compare expression of checked genes

Potri.012G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.