Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARF2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 1034 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 504 / 1e-168 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 462 / 7e-153 ARF ARF9 auxin response factor 9 (.1.2) AT3G61830 449 / 6e-148 ARF ARF18 auxin response factor 18 (.1) AT2G46530 446 / 9e-147 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G60450 431 / 8e-139 ARF ARF4 auxin response factor 4 (.1) AT1G35540 366 / 4e-116 ARF ARF14 auxin response factor 14 (.1) AT2G33860 362 / 1e-114 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 369 / 7e-114 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 363 / 2e-113 ARF ARF8, ATARF8 auxin response factor 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105300 [exp] 1383 / 0 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 713 / 0 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 706 / 0 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G001000 [exp] 510 / 8e-171 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 505 / 5e-169 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 484 / 3e-160 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 475 / 6e-157 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 473 / 2e-156 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 469 / 1e-154 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032541 [exp] 1092 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 1086 / 0 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 503 / 7e-168 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 495 / 1e-164 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 478 / 2e-158 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032413 [exp] 421 / 5e-141 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10013942 [exp] 367 / 6e-116 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10027600 [exp] 377 / 2e-115 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10005264 [exp] 366 / 2e-115 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10033598 [exp] 366 / 6e-114 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.012G106100.2 pacid=42783064 polypeptide=Potri.012G106100.2.p locus=Potri.012G106100 ID=Potri.012G106100.2.v4.1 annot-version=v4.1 ATGGCTTCCTCAGAGATTTCAGCAAAAGCTAACAGTGGAAACATTAAAGGAGGAGGAGAGAGCTTCTCTTCTGGTTACAGTGAAGCTATGGAAGGGCAAA AAGGTCATTCCACCCATCCAAGCTCAGCTAGAGATGCTGAGACTGCGTTGTATAATGAGCTATGGCATGCTTGCGCTGGTCCTCTAGTGACTGTACCTCG CGAAGGAGATCATGTGTTTTATTTCCCTCAAGGACATCTAGAGCAGGTGGAGGCATCGACGAATCAGGTAGCAGACCAGCAGATGCCGTTGTACGATCTT CCACCGAAGATCTTGTGTCGTGTGGTTAATGTTCAATTGAAGGCTGAACCGGATACTGATGAGGTGTTTGCACAAGTGACTCTACTTCCTTTGCACAACC AAGATGAGAATGCATCGGAGAAGGAGCCTCCTCCACCTCCACCACCGCGATTTCATGTACATTCATTTTGTAAAACCCTGACTGCTTCGGATACCAGTAC TCATGGCGGTTTTTCAGTTCTTAGACGACATGCAGATGAATGTCTTCCACCATTGGATATGTCAAGGCAGCCTCCAACACAGGAATTGGTTGCCAAGGAT TTGCATGGAAGTGAATGGCGATTCAGGCACATTTTTCGGGGTCAACCACGGAGGCACTTGCTTCAGAGTGGATGGAGTGTGTTTGTTAGCTCTAAAAGGC TTGTTGCTGGTGATGCCTTTATATTTCTAAGAGGTGAGAATGGAGAACTTCGAGTTGGTGTTAGACGTGCAATGAGACAGCAGAGTAATGTTCCATCATC GGTCATATCCAGCCACAGCATGCATCTTGGTGTTCTTGCTACCGCATGGCATGCTGTTTCAACAGGGACAATGTTCACTGTTTATTACAAGCCAAGGACA AGTCCTGCTGAGTTCATTGTCCCATTTGATCAATACATGGAGTCTGTCAAGAGTAATTATTCCATAGGGATGAGGTTTAAAATGAGATTTGAAGGAGAAG AAGCTCCTGAGCAAAGATTTACTGGCACTATTGTCGGAATTGAAGATGCTGATCCCAGTAGGTGGAAGGATTCTAAATGGAGGTGCCTTAAGGTGAGATG GGATGAAACTTCTACAATACCTCGACCAGATAGAGTTTCACCATGGAAAATAGAGCCTGCTCTTGCACCTCCTGCACTAAATCCTCTTCCAATGCCCAGG CCAAAAAGGCCCCGAGCAAACATGGTGCCCTCATCTCCCGACTCCTCTGTTCTTACCAGAGAAGGTTCATCCAAAGTAACTGCAGACCCTTCATCAGCAA GTGGATTTTCAAGGGTCCTGCGAGGTCAAGAGTTCTCGACCTTGAGAGGCAATTTCGAAGAGGGCAACGAGTCTGATGTTGCTGAAAAGTCTGTTTTGTG GCCACCCTCAGCAGACGATGAGAAGATTGATGTGTTATCATCTTCAAGAAGATTTGGATCAGAGTGGTGGATATCCTCTGCCAGACAGGAACCGACCTAC ACAGATTTGCTATCTGGCTTCGGGGCAAATGCTGATTCATCCCATGGGTTTGGTGCTCCGTTTGTTGACCAAACTGCTGGGGGCGCTAATCCAATGAAGA AACACTTGTCAGATCAAGGGCAGTTCAATTTGCTTGCCAGCCCATGGTCCATAATGTCCCCAGGCCTCTCTCTAAAGTTGTCAGAGTCAAACTCTAGGGT TCCAATACAAGGCAGCAGCGATGTAACATATCAATCAAGGGAAAATATCAGATACAGTGCATTCAGTGAGTATCCCATGCTTCACGGTCTGAGAGTCGAG CAATCTCATGGAAACTGTATGATGCCTCCCCCGCCATCTCATTTTGATAATCATGCTCATACAAGAGAGCTAATACCAAAACCCAAACTGGTGCAAGAAC ATAATACCGGAAAATCTTTGGATGGAAACTGCAAGCTATTTGGTATTCCCCTGAAAATTAGTAAACCCGCCACACCAGAGCAAGCAGGACCAACAAACAT GGTGAACGAACCGATGGGTCACACCCAACCTGCGAGTCACCAACTCACATCTGAATCAGATCAGAAGTCAGAACACTCCAGGGGTTCAAAGTTGGCCGAT GAAAATGAAAACGAGAAACCACTCCAGGTTGGCCACATGCGTATGAGGGACAGTCATGGAAAAGCACAAAACAGCTCAACCAGGAGTTGTACAAAGGTTC ACAAGCAGGGGATTGCACTTGGTAGATCCGTTGATCTTACGAGGTTCAATAACTATGATGAGTTGATTGCTGAATTGGACCGGTTGTTTGAATTTAATGG TGAATTACTGGCTCCCCAAAAGAATTGGTTGATTGTGTATACTGATGACGAGGATGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAATTCGTCGGC ATGGTTAGGAAGATTGTTATTTACACCAGAGAGGAGGTACAGAGGATTAAACCAGGCACTTTAAATTCAAGAGTCAATGAAAATCCATCGGGCGTGGAGG GTGAGGATGCTAAAGAAGCCAAACATCTGCCACTTCCTTCAGCATCTAGTCCTTTGAGTTGTTAG
AA sequence Show only first row Show all	>Potri.012G106100.2 pacid=42783064 polypeptide=Potri.012G106100.2.p locus=Potri.012G106100 ID=Potri.012G106100.2.v4.1 annot-version=v4.1 MASSEISAKANSGNIKGGGESFSSGYSEAMEGQKGHSTHPSSARDAETALYNELWHACAGPLVTVPREGDHVFYFPQGHLEQVEASTNQVADQQMPLYDL PPKILCRVVNVQLKAEPDTDEVFAQVTLLPLHNQDENASEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKD LHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQSNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRT SPAEFIVPFDQYMESVKSNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPSRWKDSKWRCLKVRWDETSTIPRPDRVSPWKIEPALAPPALNPLPMPR PKRPRANMVPSSPDSSVLTREGSSKVTADPSSASGFSRVLRGQEFSTLRGNFEEGNESDVAEKSVLWPPSADDEKIDVLSSSRRFGSEWWISSARQEPTY TDLLSGFGANADSSHGFGAPFVDQTAGGANPMKKHLSDQGQFNLLASPWSIMSPGLSLKLSESNSRVPIQGSSDVTYQSRENIRYSAFSEYPMLHGLRVE QSHGNCMMPPPPSHFDNHAHTRELIPKPKLVQEHNTGKSLDGNCKLFGIPLKISKPATPEQAGPTNMVNEPMGHTQPASHQLTSESDQKSEHSRGSKLAD ENENEKPLQVGHMRMRDSHGKAQNSSTRSCTKVHKQGIALGRSVDLTRFNNYDELIAELDRLFEFNGELLAPQKNWLIVYTDDEDDMMLVGDDPWQEFVG MVRKIVIYTREEVQRIKPGTLNSRVNENPSGVEGEDAKEAKHLPLPSASSPLSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.012G106100 [exp]	0	1	Pt-ARF2.2
AT2G06040			unknown protein		Potri.006G220600 [exp]	1.00	0.8786
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	1.73	0.8200	Pt-ARF2.1
AT3G13670			Protein kinase family protein ...		Potri.001G009700 [exp]	4.24	0.8036
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.007G035200 [exp]	4.47	0.8082	Pt-XLG.2
AT5G63550			DEK domain-containing chromati...		Potri.012G102500 [exp]	10.24	0.8051
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	12.00	0.7548
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	12.72	0.7905
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	13.85	0.7943	Pt-EIN3.1
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	15.58	0.7509
AT3G49601			unknown protein		Potri.006G233000 [exp]	18.89	0.7985

Compare expression of checked genes

Potri.012G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.